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The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research
Covering: up to 2018 With contributions from the global natural product (NP) research
community, and continuing the Raw Data Initiative, this review collects a comprehensive …
community, and continuing the Raw Data Initiative, this review collects a comprehensive …
RepoRT: a comprehensive repository for small molecule retention times
Liquid chromatography (LC) is fre-quently used to separate metabolites and other small
molecules. Retention time is the time required for a particular molecule to pass through the …
molecules. Retention time is the time required for a particular molecule to pass through the …
PredRet: prediction of retention time by direct map** between multiple chromatographic systems
Demands in research investigating small molecules by applying untargeted approaches
have been a key motivator for the development of repositories for mass spectrometry spectra …
have been a key motivator for the development of repositories for mass spectrometry spectra …
MicroRNA regulation during the tomato fruit development and ripening: A review
The microRNA (miRNA) molecules class is the most studied class of non-coding RNA.
These molecules regulate the developmental program in plants including fruit ripening …
These molecules regulate the developmental program in plants including fruit ripening …
Physical properties, phenolic profile and antioxidant capacity of Java tea (Clerodendranthus spicatus) stems as affected by steam explosion treatment
Java tea (Clerodendranthus spicatus) has been favored for its various health benefits and
abundance of phenolic substances. Steam explosion (SE) treatment was performed in the …
abundance of phenolic substances. Steam explosion (SE) treatment was performed in the …
msPurity: automated evaluation of precursor ion purity for mass spectrometry-based fragmentation in metabolomics
Tandem mass spectrometry (MS/MS or MS2) is a widely used approach for structural
annotation and identification of metabolites in complex biological samples. The importance …
annotation and identification of metabolites in complex biological samples. The importance …
TOMATOMET: A metabolome database consists of 7118 accurate mass values detected in mature fruits of 25 tomato cultivars
T Ara, N Sakurai, S Takahashi, N Waki… - Plant …, 2021 - Wiley Online Library
The total number of low‐molecular‐weight compounds in the plant kingdom, most of which
are secondary metabolites, is hypothesized to be over one million, although only a limited …
are secondary metabolites, is hypothesized to be over one million, although only a limited …
Multi-omics dataset of bovine mammary epithelial cells stimulated by ten different essential amino acids
L Xu, X Wang, X Li, H Liu, J Zhao, D Bu - Scientific Data, 2024 - nature.com
Application of high-throughput sequencing and screening help to detect the transcriptional
and metabolic discrepancies in organs provided with various levels of nutrients. The …
and metabolic discrepancies in organs provided with various levels of nutrients. The …
Laser microdissection of tomato fruit cell and tissue types for transcriptome profiling
This protocol enables transcriptome profiling of specific cell or tissue types that are isolated
from tomato using laser microdissection (LM). To prepare tissue for LM, fruit samples are first …
from tomato using laser microdissection (LM). To prepare tissue for LM, fruit samples are first …
[HTML][HTML] ROASMI: accelerating small molecule identification by repurposing retention data
FY Sun, YH Yin, HJ Liu, LN Shen… - Journal of …, 2025 - pmc.ncbi.nlm.nih.gov
The limited replicability of retention data hinders its application in untargeted metabolomics
for small molecule identification. While retention order models hold promise in addressing …
for small molecule identification. While retention order models hold promise in addressing …