The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research

JB McAlpine, SN Chen, A Kutateladze… - Natural product …, 2019‏ - pubs.rsc.org
Covering: up to 2018 With contributions from the global natural product (NP) research
community, and continuing the Raw Data Initiative, this review collects a comprehensive …

RepoRT: a comprehensive repository for small molecule retention times

F Kretschmer, EM Harrieder, MA Hoffmann, S Böcker… - Nature …, 2024‏ - nature.com
Liquid chromatography (LC) is fre-quently used to separate metabolites and other small
molecules. Retention time is the time required for a particular molecule to pass through the …

PredRet: prediction of retention time by direct map** between multiple chromatographic systems

J Stanstrup, S Neumann, U Vrhovsek - Analytical chemistry, 2015‏ - ACS Publications
Demands in research investigating small molecules by applying untargeted approaches
have been a key motivator for the development of repositories for mass spectrometry spectra …

MicroRNA regulation during the tomato fruit development and ripening: A review

CA Cedillo-Jimenez, AA Feregrino-Perez… - Scientia …, 2020‏ - Elsevier
The microRNA (miRNA) molecules class is the most studied class of non-coding RNA.
These molecules regulate the developmental program in plants including fruit ripening …

Physical properties, phenolic profile and antioxidant capacity of Java tea (Clerodendranthus spicatus) stems as affected by steam explosion treatment

J Wang, X Zhang, S Li, T Zhang, W Sui, M Zhang… - Food Chemistry, 2024‏ - Elsevier
Java tea (Clerodendranthus spicatus) has been favored for its various health benefits and
abundance of phenolic substances. Steam explosion (SE) treatment was performed in the …

msPurity: automated evaluation of precursor ion purity for mass spectrometry-based fragmentation in metabolomics

TN Lawson, RJM Weber, MR Jones… - Analytical …, 2017‏ - ACS Publications
Tandem mass spectrometry (MS/MS or MS2) is a widely used approach for structural
annotation and identification of metabolites in complex biological samples. The importance …

TOMATOMET: A metabolome database consists of 7118 accurate mass values detected in mature fruits of 25 tomato cultivars

T Ara, N Sakurai, S Takahashi, N Waki… - Plant …, 2021‏ - Wiley Online Library
The total number of low‐molecular‐weight compounds in the plant kingdom, most of which
are secondary metabolites, is hypothesized to be over one million, although only a limited …

Multi-omics dataset of bovine mammary epithelial cells stimulated by ten different essential amino acids

L Xu, X Wang, X Li, H Liu, J Zhao, D Bu - Scientific Data, 2024‏ - nature.com
Application of high-throughput sequencing and screening help to detect the transcriptional
and metabolic discrepancies in organs provided with various levels of nutrients. The …

Laser microdissection of tomato fruit cell and tissue types for transcriptome profiling

LBB Martin, P Nicolas, AJ Matas, Y Shinozaki… - nature protocols, 2016‏ - nature.com
This protocol enables transcriptome profiling of specific cell or tissue types that are isolated
from tomato using laser microdissection (LM). To prepare tissue for LM, fruit samples are first …

[HTML][HTML] ROASMI: accelerating small molecule identification by repurposing retention data

FY Sun, YH Yin, HJ Liu, LN Shen… - Journal of …, 2025‏ - pmc.ncbi.nlm.nih.gov
The limited replicability of retention data hinders its application in untargeted metabolomics
for small molecule identification. While retention order models hold promise in addressing …