Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression

S Chen, G Zhu, Y Yang, F Wang, YT **ao, N Zhang… - Nature cell …, 2021 - nature.com
Prostate cancer shows remarkable clinical heterogeneity, which manifests in spatial and
clonal genomic diversity. By contrast, the transcriptomic heterogeneity of prostate tumours is …

Molecular landmarks of tumor hypoxia across cancer types

V Bhandari, C Hoey, LY Liu, E Lalonde, J Ray… - Nature …, 2019 - nature.com
Many primary-tumor subregions have low levels of molecular oxygen, termed hypoxia.
Hypoxic tumors are at elevated risk for local failure and distant metastasis, but the molecular …

[HTML][HTML] Widespread and functional RNA circularization in localized prostate cancer

S Chen, V Huang, X Xu, J Livingstone, F Soares… - Cell, 2019 - cell.com
The cancer transcriptome is remarkably complex, including low-abundance transcripts,
many not polyadenylated. To fully characterize the transcriptome of localized prostate …

Visualization of very large high-dimensional data sets as minimum spanning trees

D Probst, JL Reymond - Journal of Cheminformatics, 2020 - Springer
The chemical sciences are producing an unprecedented amount of large, high-dimensional
data sets containing chemical structures and associated properties. However, there are …

The proteogenomic landscape of curable prostate cancer

A Sinha, V Huang, J Livingstone, J Wang, NS Fox… - Cancer Cell, 2019 - cell.com
DNA sequencing has identified recurrent mutations that drive the aggressiveness of prostate
cancers. Surprisingly, the influence of genomic, epigenomic, and transcriptomic …

[HTML][HTML] A lncRNA from the FTO locus acts as a suppressor of the m6A writer complex and p53 tumor suppression signaling

J Zhang, J Wei, R Sun, H Sheng, K Yin, Y Pan… - Molecular cell, 2023 - cell.com
Summary N 6-methyladenosine (m 6 A) of mRNAs modulated by the METTL3-METTL14-
WTAP-RBM15 methyltransferase complex and m 6 A demethylases such as FTO play …

Prostate lineage-specific metabolism governs luminal differentiation and response to antiandrogen treatment

JM Giafaglione, PD Crowell, AML Delcourt… - Nature cell …, 2023 - nature.com
Lineage transitions are a central feature of prostate development, tumourigenesis and
treatment resistance. While epigenetic changes are well known to drive prostate lineage …

Sex differences in cancer driver genes and biomarkers

CH Li, S Haider, YJ Shiah, K Thai, PC Boutros - Cancer research, 2018 - AACR
Cancer differs significantly between men and women; even after adjusting for known
epidemiologic risk factors, the sexes differ in incidence, outcome, and response to therapy …

Drug screening at single-organoid resolution via bioprinting and interferometry

PJ Tebon, B Wang, AL Markowitz, A Davarifar… - Nature …, 2023 - nature.com
High throughput drug screening is an established approach to investigate tumor biology and
identify therapeutic leads. Traditional platforms use two-dimensional cultures which do not …

Divergent mutational processes distinguish hypoxic and normoxic tumours

V Bhandari, CH Li, RG Bristow, PC Boutros - Nature communications, 2020 - nature.com
Many primary tumours have low levels of molecular oxygen (hypoxia), and hypoxic tumours
respond poorly to therapy. Pan-cancer molecular hallmarks of tumour hypoxia remain poorly …