Genetic mutations and epigenetic modifications: driving cancer and informing precision medicine

KM Coyle, JE Boudreau… - BioMed research …, 2017 - Wiley Online Library
Cancer treatment is undergoing a significant revolution from “one‐size‐fits‐all” cytotoxic
therapies to tailored approaches that precisely target molecular alterations. Precision …

[HTML][HTML] Identification of biomarkers for breast cancer using databases

E Lee, A Moon - Journal of Cancer Prevention, 2016 - ncbi.nlm.nih.gov
Breast cancer is one of the major causes of cancer death in women. Many studies have
sought to identify specific molecules involved in breast cancer and understand their …

Integrative analysis of DNA methylation and gene expression to determine specific diagnostic biomarkers and prognostic biomarkers of breast cancer

M Zhang, Y Wang, Y Wang, L Jiang, X Li… - Frontiers in Cell and …, 2020 - frontiersin.org
Background: DNA methylation is a common event in the early development of various
tumors, including breast cancer (BRCA), which has been studies as potential tumor …

Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers

J Zhang, K Huang - Bmc Genomics, 2017 - Springer
Background DNA methylation is the major form of epigenetic modifications through which
the cell regulates the gene expression and silencing. There have been extensive studies on …

[PDF][PDF] Topological summaries of tumor images improve prediction of disease free survival in glioblastoma multiforme

L Crawford, A Monod, AX Chen… - arxiv preprint arxiv …, 2016 - researchgate.net
In this paper we propose a novel statistic, the smooth Euler characteristic transform (SECT).
The SECT is designed to integrate shape information into standard statistical models. More …

pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data

H Sun, Y Wang, Y Chen, Y Li, S Wang - Bioinformatics, 2017 - academic.oup.com
Motivation DNA methylation plays an important role in many biological processes and
cancer progression. Recent studies have found that there are also differences in methylation …

Obesity and the breast cancer methylome

WB Coleman - Current opinion in pharmacology, 2016 - Elsevier
Highlights•Obesity is a risk factor for breast cancer, but the relationship is not simple.•Obesity
is associated with epigenetic alterations involving DNA methylation.•Breast cancer is …

Prediction of the prognosis based on chromosomal instability-related DNA methylation patterns of ELOVL2 and UBAC2 in PTCs

J Han, M Chen, Q Fang, Y Zhang, Y Wang… - … Therapy-Nucleic Acids, 2019 - cell.com
Papillary thyroid carcinoma (PTC) is the most common malignant tumor of endocrine
systems. Chromosomal instability (CIN) is crucial to the clinical prognoses of tumor patients …

[PDF][PDF] Genomic alterations and protein expression of STAT4 in pancreatic cancer: a study of bioinformatics based on public data and immunohistochemistry validation …

DM Wei, ZX Chen, RQ He, L Shi, S Zhou, W Li… - Int J Clin Exp …, 2016 - e-century.us
Introduction: Signal transducers and activators of transcription (STATs) are members of
conserved transcription factors family, and deregulated STAT family members are closely …

Bayesian Kernel Models for Statistical Genetics and Cancer Genomics

L Crawford - 2017 - search.proquest.com
The main contribution of this thesis is to examine the utility of kernel regression approaches
and variance component models for solving complex problems in statistical genetics and …