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The K = 2 conundrum
Assessments of population genetic structure have become an increasing focus as they can
provide valuable insight into patterns of migration and gene flow. structure, the most highly …
provide valuable insight into patterns of migration and gene flow. structure, the most highly …
Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives
The importance of plant genetic diversity (PGD) is now being recognized as a specific area
since exploding population with urbanization and decreasing cultivable lands are the critical …
since exploding population with urbanization and decreasing cultivable lands are the critical …
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …
present a tomato pan-genome constructed using genome sequences of 725 …
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication
Domestication of the apple was mainly driven by interspecific hybridization. In the present
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K
The identification of the genetic structure of populations from multilocus genotype data has
become a central component of modern population‐genetic data analysis. Application of …
become a central component of modern population‐genetic data analysis. Application of …
The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem
SJ Puechmaille - Molecular ecology resources, 2016 - Wiley Online Library
Inferences of population structure and more precisely the identification of genetically
homogeneous groups of individuals are essential to the fields of ecology, evolutionary …
homogeneous groups of individuals are essential to the fields of ecology, evolutionary …
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
Human selection has reshaped crop genomes. Here we report an apple genome variation
map generated through genome sequencing of 117 diverse accessions. A comprehensive …
map generated through genome sequencing of 117 diverse accessions. A comprehensive …
Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
fastSTRUCTURE: variational inference of population structure in large SNP data sets
Tools for estimating population structure from genetic data are now used in a wide variety of
applications in population genetics. However, inferring population structure in large modern …
applications in population genetics. However, inferring population structure in large modern …
A genomic perspective on hybridization and speciation
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …
special opportunity to characterize the history of hybridization and the genetic basis of …