Predictive chemistry: machine learning for reaction deployment, reaction development, and reaction discovery

Z Tu, T Stuyver, CW Coley - Chemical science, 2023 - pubs.rsc.org
The field of predictive chemistry relates to the development of models able to describe how
molecules interact and react. It encompasses the long-standing task of computer-aided …

Artificial Intelligence Methods and Models for Retro-Biosynthesis: A Sco** Review

G Gricourt, P Meyer, T Duigou, JL Faulon - ACS Synthetic Biology, 2024 - ACS Publications
Retrosynthesis aims to efficiently plan the synthesis of desirable chemicals by strategically
breaking down molecules into readily available building block compounds. Having a long …

Msdr: Multi-step dependency relation networks for spatial temporal forecasting

D Liu, J Wang, S Shang, P Han - Proceedings of the 28th ACM SIGKDD …, 2022 - dl.acm.org
Spatial temporal forecasting plays an important role in improving the quality and
performance of Intelligent Transportation Systems. This task is rather challenging due to the …

Generative diffusion models on graphs: Methods and applications

C Liu, W Fan, Y Liu, J Li, H Li, H Liu, J Tang… - arxiv preprint arxiv …, 2023 - arxiv.org
Diffusion models, as a novel generative paradigm, have achieved remarkable success in
various image generation tasks such as image inpainting, image-to-text translation, and …

Graph neural networks for molecules

Y Wang, Z Li, A Barati Farimani - Machine learning in molecular sciences, 2023 - Springer
Graph neural networks (GNNs), which are capable of learning representations from
graphical data, are naturally suitable for modeling molecular systems. This review …

Retrosynthetic planning with dual value networks

G Liu, D Xue, S **e, Y **a, A Tripp… - International …, 2023 - proceedings.mlr.press
Retrosynthesis, which aims to find a route to synthesize a target molecule from commercially
available starting materials, is a critical task in drug discovery and materials design …

Retrograph: Retrosynthetic planning with graph search

S **e, R Yan, P Han, Y **a, L Wu, C Guo… - Proceedings of the 28th …, 2022 - dl.acm.org
Retrosynthetic planning, which aims to find a reaction pathway to synthesize a target
molecule, plays an important role in chemistry and drug discovery. This task is usually …

Retrolens: A human-ai collaborative system for multi-step retrosynthetic route planning

C Shi, Y Hu, S Wang, S Ma, C Zheng, X Ma… - Proceedings of the 2023 …, 2023 - dl.acm.org
Multi-step retrosynthetic route planning (MRRP) is the core task in synthetic chemistry, in
which chemists recursively deconstruct a target molecule to find a set of reactants that make …

FusionRetro: molecule representation fusion via in-context learning for retrosynthetic planning

S Liu, Z Tu, M Xu, Z Zhang, L Lin… - International …, 2023 - proceedings.mlr.press
Retrosynthetic planning aims to devise a complete multi-step synthetic route from starting
materials to a target molecule. Current strategies use a decoupled approach of single-step …

Efficient retrosynthetic planning with MCTS exploration enhanced A* search

D Zhao, S Tu, L Xu - Communications Chemistry, 2024 - nature.com
Retrosynthetic planning, which aims to identify synthetic pathways for target molecules from
starting materials, is a fundamental problem in synthetic chemistry. Computer-aided …