Towards NeuroML: model description methods for collaborative modelling in neuroscience

NH Goddard, M Hucka, F Howell… - … of the Royal …, 2001 - royalsocietypublishing.org
Biological nervous systems and the mechanisms underlying their operation exhibit
astonishing complexity. Computational models of these systems have been correspondingly …

From gene networks to brain networks

M Bota, HW Dong, LW Swanson - Nature neuroscience, 2003 - nature.com
The brain's structural organization is so complex that 2,500 years of analysis leaves
pervasive uncertainty about (i) the identity of its basic parts (regions with their neuronal cell …

Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database

R Kötter - Neuroinformatics, 2004 - Springer
Connectivity is the key to understanding distributed and cooperative brain functions.
Detailed and comprehensive data on large-scale connectivity between primate brain areas …

Neuroinformatics analysis of molecular expression patterns and neuron populations in gray matter regions: the rat BST as a rich exemplar

M Bota, O Sporns, LW Swanson - Brain research, 2012 - Elsevier
The rat bed nuclei of the stria terminalis (BST) is an important part of the cerebral nuclei,
both structurally and functionally. However, the literature is rather scarce and more …

Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS

M Bota, HW Dong, LW Swanson - Frontiers in neuroinformatics, 2012 - frontiersin.org
Many different independently published neuroanatomical parcellation schemes (brain maps,
nomenclatures, or atlases) can exist for a particular species, although one scheme (a …

Computational methods for the analysis of brain connectivity

CC Hilgetag, R Kötter, KE Stephan… - … : Principles and methods, 2002 - Springer
The body of knowledge about the connectivity of brain networks on different structural scales
is growing rapidly. This information is considered highly valuable for determining the neural …

[LIBRO][B] Neuroinformatics for neuropsychology

V Jagaroo, V Jagaroo - 2009 - Springer
There is clearly an enormous difference between NI applications and the general use of
computers in the neurosciences. NI is much more than a simple extension of general …

[PDF][PDF] Modeling and informatics in drug design

PV Bharatam, S Khanna, SM Francis - … handbook: ADME and …, 2008 - academia.edu
Modeling and informatics in drug design Page 19 1 1 MODELING AND INFORMATICS IN
DRUG DESIGN Prasad V. Bharatam,* Smriti Khanna, and Sandrea M. Francis National Institute …

Integrating databases and expert systems for the analysis of brain structures: connections, similarities, and homologies

M Bota, MA Arbib - Neuroinformatics, 2004 - Springer
Abstract The NeuroHomology Database system (NHDB) combines databases related to
brain structure from different species with different knowledge management systems (KMSs) …

Intelligent approaches to mining the primary research literature: techniques, systems, and examples

GAPC Burns, D Feng, E Hovy - Computational Intelligence in Medical …, 2008 - Springer
In this chapter, we describe how creating knowledge bases from the primary biomedical
literature is formally equivalent to the process of performing a literature review or a 'research …