On the interpretations of joint modeling in community ecology

G Poggiato, T Münkemüller, D Bystrova, J Arbel… - Trends in ecology & …, 2021 - cell.com
Explaining and modeling species communities is more than ever a central goal of ecology.
Recently, joint species distribution models (JSDMs), which extend species distribution …

Co‐occurrence is not evidence of ecological interactions

FG Blanchet, K Cazelles, D Gravel - Ecology Letters, 2020 - Wiley Online Library
There is a rich amount of information in co‐occurrence (presence–absence) data that could
be used to understand community assembly. This proposition first envisioned by Forbes …

Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing

HH Zimmermann, KR Stoof-Leichsenring… - Nature …, 2023 - nature.com
Sea ice is a key factor for the functioning and services provided by polar marine ecosystems.
However, ecosystem responses to sea-ice loss are largely unknown because time-series …

Rethinking livestock encroachment at a protected area boundary

W Xu, B Butt - Proceedings of the National Academy of Sciences, 2024 - pnas.org
The presence of livestock inside protected areas, or “livestock encroachment,” is a global
conservation concern because livestock is broadly thought to negatively affect wildlife. The …

Immunosuppressive niche engineering at the onset of human colorectal cancer

CD Gatenbee, AM Baker, RO Schenck, M Strobl… - Nature …, 2022 - nature.com
The evolutionary dynamics of tumor initiation remain undetermined, and the interplay
between neoplastic cells and the immune system is hypothesized to be critical in …

Community assembly processes and drivers sha** marine fish community structure in the North Sea

M Montanyès, B Weigel, M Lindegren - Ecography, 2023 - Wiley Online Library
To preserve natural ecosystems and their biodiversity, there is a need to anticipate future
ecosystem changes through better understanding of underlying drivers and assembly …

The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances

J Chiquet, M Mariadassou, S Robin - Frontiers in Ecology and …, 2021 - frontiersin.org
Joint Species Distribution Models (JSDM) provide a general multivariate framework to study
the joint abundances of all species from a community. JSDM account for both structuring …

Embracing plant–plant interactions—Rethinking predictions of species range shifts

P Sanczuk, D Landuyt, E De Lombaerde… - Journal of …, 2024 - Wiley Online Library
Interactions among plants are changing across the globe resulting from a multitude of
changes in the environment. Obtaining accurate predictions of plant species' range …

A new joint species distribution model for faster and more accurate inference of species associations from big community data

M Pichler, F Hartig - Methods in Ecology and Evolution, 2021 - Wiley Online Library
Joint species distribution models (JSDMs) explain spatial variation in community
composition by contributions of the environment, biotic associations and possibly spatially …

Point of (no) return? Vegetation structure and diversity of restored mangroves in Sulawesi, Indonesia, 14–16 years on

R Djamaluddin, M Fusi, B Djabar, D Evans… - Restoration …, 2023 - Wiley Online Library
Mangrove forests, benefitting millions of people, experience significant degradation. Global
recognition of the urgency of halting and reversing this trend have initiated numerous …