MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

JD Tournier, R Smith, D Raffelt, R Tabbara… - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

Neurodevelopment of the association cortices: Patterns, mechanisms, and implications for psychopathology

VJ Sydnor, B Larsen, DS Bassett, A Alexander-Bloch… - Neuron, 2021 - cell.com
The human brain undergoes a prolonged period of cortical development that spans multiple
decades. During childhood and adolescence, cortical development progresses from lower …

A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence

EJ Allen, G St-Yves, Y Wu, JL Breedlove… - Nature …, 2022 - nature.com
Extensive sampling of neural activity during rich cognitive phenomena is critical for robust
understanding of brain function. Here we present the Natural Scenes Dataset (NSD), in …

Denoising of diffusion MRI using random matrix theory

J Veraart, DS Novikov, D Christiaens, B Ades-Aron… - Neuroimage, 2016 - Elsevier
We introduce and evaluate a post-processing technique for fast denoising of diffusion-
weighted MR images. By exploiting the intrinsic redundancy in diffusion MRI using universal …

White matter integrity, fiber count, and other fallacies: the do's and don'ts of diffusion MRI

DK Jones, TR Knösche, R Turner - Neuroimage, 2013 - Elsevier
Diffusion-weighted MRI (DW-MRI) has been increasingly used in imaging neuroscience
over the last decade. An early form of this technique, diffusion tensor imaging (DTI) was …

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

B Jeurissen, JD Tournier, T Dhollander, A Connelly… - NeuroImage, 2014 - Elsevier
Constrained spherical deconvolution (CSD) has become one of the most widely used
methods to extract white matter (WM) fibre orientation information from diffusion-weighted …

Dipy, a library for the analysis of diffusion MRI data

E Garyfallidis, M Brett, B Amirbekian… - Frontiers in …, 2014 - frontiersin.org
Diffusion Imaging in Python (Dipy) is a free and open source software project for the analysis
of data from diffusion magnetic resonance imaging (dMRI) experiments. dMRI is an …

[HTML][HTML] The cingulum bundle: Anatomy, function, and dysfunction

EJ Bubb, C Metzler-Baddeley, JP Aggleton - … & Biobehavioral Reviews, 2018 - Elsevier
The cingulum bundle is a prominent white matter tract that interconnects frontal, parietal, and
medial temporal sites, while also linking subcortical nuclei to the cingulate gyrus. Despite its …

MRtrix: diffusion tractography in crossing fiber regions

JD Tournier, F Calamante… - International journal of …, 2012 - Wiley Online Library
In recent years, diffusion‐weighted magnetic resonance imaging has attracted considerable
attention due to its unique potential to delineate the white matter pathways of the brain …

Deterministic diffusion fiber tracking improved by quantitative anisotropy

FC Yeh, TD Verstynen, Y Wang… - PloS one, 2013 - journals.plos.org
Diffusion MRI tractography has emerged as a useful and popular tool for map**
connections between brain regions. In this study, we examined the performance of …