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[HTML][HTML] Insertions and deletions in protein evolution and engineering
Protein evolution or engineering studies are traditionally focused on amino acid
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
Efficient and accurate quantitative profiling of alternative splicing patterns of any complexity on a laptop
Alternative splicing (AS) is a widespread process underlying the generation of transcriptomic
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
Regulatory expansion in mammals of multivalent hnRNP assemblies that globally control alternative splicing
Alternative splicing (AS) patterns have diverged rapidly during vertebrate evolution, yet the
functions of most species-and lineage-specific splicing events are not known. We observe …
functions of most species-and lineage-specific splicing events are not known. We observe …
Tandem repeats in proteins: prediction algorithms and biological role
M Pellegrini - Frontiers in bioengineering and biotechnology, 2015 - frontiersin.org
Tandem repetitions in protein sequence and structure is a fascinating subject of research
which has been a focus of study since the late 1990s. In this survey, we give an overview on …
which has been a focus of study since the late 1990s. In this survey, we give an overview on …
Geobacter sulfurreducens Extracellular Multiheme Cytochrome PgcA Facilitates Respiration to Fe(III) Oxides But Not Electrodes
LA Zacharoff, DJ Morrone, DR Bond - Frontiers in Microbiology, 2017 - frontiersin.org
Extracellular cytochromes are hypothesized to facilitate the final steps of electron transfer
between the outer membrane of the metal-reducing bacterium Geobacter sulfurreducens …
between the outer membrane of the metal-reducing bacterium Geobacter sulfurreducens …
Evolutionary tinkering enriches the hierarchical and nested structures in amino acid sequences
Z Zhang, C Liu, Y Zhu, L Peng, W Qiu, Q Tang… - Physical Review …, 2024 - APS
Genetic information often exhibits hierarchical and nested relationships, achieved through
the reuse of repetitive subsequences such as duplicons and transposable elements, a …
the reuse of repetitive subsequences such as duplicons and transposable elements, a …
Evolution of protein domain repeats in metazoa
Repeats are ubiquitous elements of proteins and they play important roles for cellular
function and during evolution. Repeats are, however, also notoriously difficult to capture …
function and during evolution. Repeats are, however, also notoriously difficult to capture …
Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming
V Pugacheva, A Korotkov, E Korotkov - Statistical Applications in …, 2016 - degruyter.com
The aim of this study was to show that amino acid sequences have a latent periodicity with
insertions and deletions of amino acids in unknown positions of the analyzed sequence …
insertions and deletions of amino acids in unknown positions of the analyzed sequence …
DbStRiPs: Database of structural repeats in proteins
Recent interest in repeat proteins has arisen due to stable structural folds, high evolutionary
conservation and repertoire of functions provided by these proteins. However, repeat …
conservation and repertoire of functions provided by these proteins. However, repeat …
Structural, functional, and evolutionary characteristics of proteins with repeats
EI Deryusheva, AV Machulin, OV Galzitskaya - Molecular Biology, 2021 - Springer
The review summarizes and systematizes the data on the classification, taxonomic
distribution, structural features, and functions of proteins with structural repeats. Modern …
distribution, structural features, and functions of proteins with structural repeats. Modern …