Design of functional metalloproteins

Y Lu, N Yeung, N Sieracki, NM Marshall - Nature, 2009 - nature.com
Metalloproteins catalyse some of the most complex and important processes in nature, such
as photosynthesis and water oxidation. An ultimate test of our knowledge of how …

Designing hydrolytic zinc metalloenzymes

ML Zastrow, VL Pecoraro - Biochemistry, 2014 - ACS Publications
Zinc is an essential element required for the function of more than 300 enzymes spanning all
classes. Despite years of dedicated study, questions regarding the connections between …

Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer

BS Der, M Machius, MJ Miley, JL Mills… - Journal of the …, 2012 - ACS Publications
Computationally designing protein–protein interactions with high affinity and desired
orientation is a challenging task. Incorporating metal-binding sites at the target interface may …

Molecular biomimetics: nanotechnology and bionanotechnology using genetically engineered peptides

C Tamerler, M Sarikaya - Philosophical Transactions of …, 2009 - royalsocietypublishing.org
Nature provides inspiration for designing materials and systems that derive their functions
from highly organized structures. Biological hard tissues are hybrid materials having …

mFASD: a structure-based algorithm for discriminating different types of metal-binding sites

W He, Z Liang, M Teng, L Niu - Bioinformatics, 2015 - academic.oup.com
Motivation: A large number of proteins contain metal ions that are essential for their stability
and biological activity. Identifying and characterizing metal-binding sites through …

PinMyMetal: A hybrid learning system to accurately model metal binding sites in macromolecules

H Zheng, H Zhang, J Zhong, M Gucwa… - Research …, 2024 - pmc.ncbi.nlm.nih.gov
Metal ions are vital components in many proteins for the inference and engineering of
protein function, with coordination complexity linked to structural (4-residue predominate) …

Structure-based de novo prediction of zinc-binding sites in proteins of unknown function

W Zhao, M Xu, Z Liang, B Ding, L Niu, H Liu… - …, 2011 - academic.oup.com
Motivation: Zinc-binding proteins are the most abundant metallo-proteins in Protein Data
Bank (PDB). Accurate prediction of zinc-binding sites in proteins of unknown function may …

Fundamentals of bio-based technologies for selective metal recovery from bio-leachates and liquid waste streams

A Sieber, S Spiess, WY Rassy, D Schild… - … in Bioengineering and …, 2025 - frontiersin.org
The number of metal-containing waste streams resulting from electronic end-of life products,
metallurgical by-products, and mine tailings to name but a few, is increasing worldwide. In …

An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteins

C Zheng, M Wang, K Takemoto, T Akutsu, Z Zhang… - PLoS …, 2012 - journals.plos.org
Zinc-binding proteins are the most abundant metalloproteins in the Protein Data Bank where
the zinc ions usually have catalytic, regulatory or structural roles critical for the function of the …

Effect of distal histidines on hydrogen peroxide activation by manganese reconstituted myoglobin

YB Cai, XH Li, J **g, JL Zhang - Metallomics, 2013 - academic.oup.com
Myoglobins provide an opportunity to investigate the effect of the secondary coordination
sphere on the functionality and reactivity of non-native metal porphyrins inside well-defined …