Surveillance of antimicrobial resistance in low-and middle-income countries: a scattered picture

K Iskandar, L Molinier, S Hallit, M Sartelli… - … Resistance & Infection …, 2021 - Springer
Data on comprehensive population-based surveillance of antimicrobial resistance is lacking.
In low-and middle-income countries, the challenges are high due to weak laboratory …

Genomics and pathotypes of the many faces of Escherichia coli

J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …

Microbiome diversity protects against pathogens by nutrient blocking

F Spragge, E Bakkeren, MT Jahn, E BN Araujo… - Science, 2023 - science.org
The human gut microbiome plays an important role in resisting colonization of the host by
pathogens, but we lack the ability to predict which communities will be protective. We …

A unified catalog of 204,938 reference genomes from the human gut microbiome

A Almeida, S Nayfach, M Boland, F Strozzi… - Nature …, 2021 - nature.com
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …

BRENDA, the ELIXIR core data resource in 2021: new developments and updates

A Chang, L Jeske, S Ulbrich, J Hofmann… - Nucleic acids …, 2021 - academic.oup.com
The BRENDA enzyme database (https://www. brenda-enzymes. org), established in 1987,
has evolved into the main collection of functional enzyme and metabolism data. In 2018 …

Combination of pre-adapted bacteriophage therapy and antibiotics for treatment of fracture-related infection due to pandrug-resistant Klebsiella pneumoniae

A Eskenazi, C Lood, J Wubbolts, M Hites… - Nature …, 2022 - nature.com
A 30-year-old bombing victim with a fracture-related pandrug-resistant Klebsiella
pneumoniae infection after long-term (> 700 days) antibiotic therapy is treated with a pre …

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

JJ Davis, AR Wattam, RK Aziz, T Brettin… - Nucleic acids …, 2020 - academic.oup.com
Abstract The PathoSystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …

Criteria to qualify microorganisms as “probiotic” in foods and dietary supplements

S Binda, C Hill, E Johansen, D Obis, B Pot… - Frontiers in …, 2020 - frontiersin.org
Still relevant after 19 years, the FAO/WHO definition of probiotics can be translated into four
simple and pragmatic criteria allowing one to conclude if specific strains of microorganisms …

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

B Liu, D Zheng, Q **, L Chen, J Yang - Nucleic acids research, 2019 - academic.oup.com
The virulence factor database (VFDB, http://www. mgc. ac. cn/VFs/) is devoted to providing
the scientific community with a comprehensive warehouse and online platform for …

GABA-modulating bacteria of the human gut microbiota

P Strandwitz, KH Kim, D Terekhova, JK Liu… - Nature …, 2019 - nature.com
The gut microbiota affects many important host functions, including the immune response
and the nervous system. However, while substantial progress has been made in growing …