The use of next generation sequencing for improving food safety: Translation into practice
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
[HTML][HTML] Use of whole genome sequencing by the federal interagency collaboration for genomics for food and feed safety in the United States
EL Stevens, HA Carleton, J Beal, GE Tillman… - Journal of food …, 2022 - Elsevier
This multiagency report developed by the Interagency Collaboration for Genomics for Food
and Feed Safety provides an overview of the use of and transition to whole genome …
and Feed Safety provides an overview of the use of and transition to whole genome …
ARIBA: rapid antimicrobial resistance genoty** directly from sequencing reads
Antimicrobial resistance (AMR) is one of the major threats to human and animal health
worldwide, yet few high-throughput tools exist to analyse and predict the resistance of a …
worldwide, yet few high-throughput tools exist to analyse and predict the resistance of a …
[HTML][HTML] Genome plasticity in Candida albicans: A cutting-edge strategy for evolution, adaptation, and survival
Candida albicans is the most implicated fungal species that grows as a commensal or
opportunistic pathogen in the human host. It is associated with many life-threatening …
opportunistic pathogen in the human host. It is associated with many life-threatening …
International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
A Shelenkov, V Akimkin, Y Mikhaylova - Microorganisms, 2023 - mdpi.com
Acinetobacter baumannii is a Gram-negative coccobacillus with exceptional survival skills in
an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it …
an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it …
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas
Abstract Chewie Nomenclature Server (chewie-NS, https://chewbbaca. online/) allows users
to share genome-based gene-by-gene ty** schemas and to maintain a common …
to share genome-based gene-by-gene ty** schemas and to maintain a common …
Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management
The COVID-19 pandemic has spread rapidly throughout the world. In the UK, the initial peak
was in April 2020; in the county of Norfolk (UK) and surrounding areas, which has a stable …
was in April 2020; in the county of Norfolk (UK) and surrounding areas, which has a stable …
A plasmid-encoded peptide from Staphylococcus aureus induces anti-myeloperoxidase nephritogenic autoimmunity
Autoreactivity to myeloperoxidase (MPO) causes anti-neutrophil cytoplasmic antibody
(ANCA)-associated vasculitis (AAV), with rapidly progressive glomerulonephritis. Here, we …
(ANCA)-associated vasculitis (AAV), with rapidly progressive glomerulonephritis. Here, we …
MentaLiST–A fast MLST caller for large MLST schemes
MLST (multi-locus sequence ty**) is a classic technique for genoty** bacteria, widely
applied for pathogen outbreak surveillance. Traditionally, MLST is based on identifying …
applied for pathogen outbreak surveillance. Traditionally, MLST is based on identifying …
A metagenomic prospective cohort study on gut microbiome composition and clinical infection in small bowel transplantation
A Madhav, R Bousfield, J Pereira-Dias, C Cormie… - Gut …, 2024 - Taylor & Francis
Two-thirds of small-bowel transplantation (SBT) recipients develop bacteremia, with the
majority of infections occurring within 3 months post-transplant. Sepsis-related mortality …
majority of infections occurring within 3 months post-transplant. Sepsis-related mortality …