Comprehensive genome analysis and variant detection at scale using DRAGEN

S Behera, S Catreux, M Rossi, S Truong, Z Huang… - Nature …, 2024 - nature.com
Research and medical genomics require comprehensive, scalable methods for the
discovery of novel disease targets, evolutionary drivers and genetic markers with clinical …

A population-specific reference panel for improved genotype imputation in African Americans

J O'Connell, T Yun, M Moreno, H Li, N Litterman… - Communications …, 2021 - nature.com
There is currently a dearth of accessible whole genome sequencing (WGS) data for
individuals residing in the Americas with Sub-Saharan African ancestry. We generated …

Exploring the genetic architecture of spontaneous coronary artery dissection using whole-genome sequencing

I Tarr, S Hesselson, SE Iismaa, E Rath… - Circulation: Genomic …, 2022 - Am Heart Assoc
Background: Spontaneous coronary artery dissection (SCAD) is a cause of acute coronary
syndrome that predominantly affects women. Its pathophysiology remains unclear but …

Very low-depth whole-genome sequencing in complex trait association studies

A Gilly, L Southam, D Suveges… - …, 2019 - academic.oup.com
Motivation Very low-depth sequencing has been proposed as a cost-effective approach to
capture low-frequency and rare variation in complex trait association studies. However, a full …

Benchmarking relatedness inference methods with genome-wide data from thousands of relatives

MD Ramstetter, TD Dyer, DM Lehman, JE Curran… - Genetics, 2017 - academic.oup.com
Relatedness inference is an essential component of many genetic analyses and popular in
consumer genetic testing. Ramstetter et al. evaluate twelve..... Inferring relatedness from …

Functional genomics and gene-environment interaction highlight the complexity of congenital heart disease caused by Notch pathway variants

G Chapman, JLM Moreau, E Ip, JO Szot… - Human Molecular …, 2020 - academic.oup.com
Congenital heart disease (CHD) is the most common birth defect and brings with it
significant mortality and morbidity. The application of exome and genome sequencing has …

Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelago

AP Morgan, NF Brazeau, B Ngasala, LE Mhamilawa… - Malaria journal, 2020 - Springer
Abstract Background Tanzania's Zanzibar archipelago has made significant gains in malaria
control over the last decade and is a target for malaria elimination. Despite consistent …

Polygenic Risk in Families With Spontaneous Coronary Artery Dissection

I Tarr, S Hesselson, M Troup, P Young… - JAMA …, 2024 - jamanetwork.com
Importance Spontaneous coronary artery dissection (SCAD) is a poorly understood cause of
acute coronary syndrome that predominantly affects women. Evidence to date suggests a …

Evaluating the impact of dropout and genoty** error on SNP-based kinship analysis with forensic samples

SD Turner, VP Nagraj, M Scholz, S Jessa… - Frontiers in …, 2022 - frontiersin.org
Technological advances in sequencing and single nucleotide polymorphism (SNP)
genoty** microarray technology have facilitated advances in forensic analysis beyond …

Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales

AP Morgan, JJ Hughes, JP Didion, WJ Jolley… - Heredity, 2022 - nature.com
House mice (Mus musculus) have spread globally as a result of their commensal
relationship with humans. In the form of laboratory strains, both inbred and outbred, they are …