Repetitive DNA sequence detection and its role in the human genome
Repetitive DNA sequences playing critical roles in driving evolution, inducing variation, and
regulating gene expression. In this review, we summarized the definition, arrangement, and …
regulating gene expression. In this review, we summarized the definition, arrangement, and …
Comparative genomics and molecular dynamics of DNA repeats in eukaryotes
Repeated elements can be widely abundant in eukaryotic genomes, composing more than
50% of the human genome, for example. It is possible to classify repeated sequences into …
50% of the human genome, for example. It is possible to classify repeated sequences into …
MISA-web: a web server for microsatellite prediction
Motivation Microsatellites are a widely-used marker system in plant genetics and forensics.
The development of reliable microsatellite markers from resequencing data is challenging …
The development of reliable microsatellite markers from resequencing data is challenging …
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
Phytoplankton blooms characterize temperate ocean margin zones in spring. We
investigated the bacterioplankton response to a diatom bloom in the North Sea and …
investigated the bacterioplankton response to a diatom bloom in the North Sea and …
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
Sorghum bicolor is a drought tolerant C4 grass used for the production of grain, forage,
sugar, and lignocellulosic biomass and a genetic model for C4 grasses due to its relatively …
sugar, and lignocellulosic biomass and a genetic model for C4 grasses due to its relatively …
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
International Aphid Genomics Consortium - PLoS biology, 2010 - journals.plos.org
Aphids are important agricultural pests and also biological models for studies of insect-plant
interactions, symbiosis, virus vectoring, and the developmental causes of extreme …
interactions, symbiosis, virus vectoring, and the developmental causes of extreme …
Earl Grey: a fully automated user-friendly transposable element annotation and analysis pipeline
Transposable elements (TEs) are major components of eukaryotic genomes and are
implicated in a range of evolutionary processes. Yet, TE annotation and characterization …
implicated in a range of evolutionary processes. Yet, TE annotation and characterization …
Using next‐generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
The application of next‐generation sequencing (NGS) technologies for the development of
simple sequence repeat (SSR) or microsatellite loci for genetic research in the botanical …
simple sequence repeat (SSR) or microsatellite loci for genetic research in the botanical …
Considering Transposable Element Diversification in De Novo Annotation Approaches
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost
ubiquitous in prokaryotic and eukaryotic genomes. They have a large impact on genome …
ubiquitous in prokaryotic and eukaryotic genomes. They have a large impact on genome …
Finding the missing honey bee genes: lessons learned from a genome upgrade
Background The first generation of genome sequence assemblies and annotations have
had a significant impact upon our understanding of the biology of the sequenced species …
had a significant impact upon our understanding of the biology of the sequenced species …