Broken detailed balance and non-equilibrium dynamics in living systems: a review

FS Gnesotto, F Mura, J Gladrow… - Reports on Progress in …, 2018 - iopscience.iop.org
Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce
broken detailed balance at the molecular scale. This molecular scale breaking of detailed …

Stochastic thermodynamics, fluctuation theorems and molecular machines

U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …

How far from equilibrium is active matter?

É Fodor, C Nardini, ME Cates, J Tailleur, P Visco… - Physical review …, 2016 - APS
Active matter systems are driven out of thermal equilibrium by a lack of generalized Stokes-
Einstein relation between injection and dissipation of energy at the microscopic scale. We …

Thermodynamic uncertainty relation for time-dependent driving

T Koyuk, U Seifert - Physical Review Letters, 2020 - APS
Thermodynamic uncertainty relations yield a lower bound on entropy production in terms of
the mean and fluctuations of a current. We derive their general form for systems under …

Temperature in and out of equilibrium: A review of concepts, tools and attempts

A Puglisi, A Sarracino, A Vulpiani - Physics Reports, 2017 - Elsevier
We review the general aspects of the concept of temperature in equilibrium and non-
equilibrium statistical mechanics. Although temperature is an old and well-established …

An introduction to stochastic thermodynamics

N Shiraishi - Fundamental Theories of Physics. Springer, Singapore, 2023 - Springer
In the past three decades, the field of stochastic thermodynamics has been formulated and
highly developed. Stochastic thermodynamics extends the framework of thermodynamics …

Nonequilibrium energetics of a single F1-ATPase molecule

S Toyabe, T Watanabe-Nakayama, T Okamoto… - Biophysical …, 2010 - cell.com
Moreover, we found that under a sufficiently strong torque in the opposite direction of ATP
hydrolytic rotations, it rotated in the opposite direction, or the ATP synthetic direction, in a …

Theoretical perspectives on biological machines

ML Mugnai, C Hyeon, M Hinczewski… - Reviews of Modern Physics, 2020 - APS
Many biological functions are executed by molecular machines, which like man-made
motors are powered by chemical energy, released by adenosine triphosphate hydrolysis …

An update on the nonequilibrium linear response

M Baiesi, C Maes - New Journal of Physics, 2013 - iopscience.iop.org
The unique fluctuation–dissipation theorem for equilibrium stands in contrast with the wide
variety of nonequilibrium linear response formulae. Their most traditional approach is' …

Nonequilibrium energetics of molecular motor kinesin

T Ariga, M Tomishige, D Mizuno - Physical review letters, 2018 - APS
Nonequilibrium energetics of single molecule translational motor kinesin was investigated
by measuring heat dissipation from the violation of the fluctuation-response relation of a …