Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Ancestral sequence reconstruction for protein engineers
In addition to its value in the study of molecular evolution, ancestral sequence reconstruction
(ASR) has emerged as a useful methodology for engineering proteins with enhanced …
(ASR) has emerged as a useful methodology for engineering proteins with enhanced …
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
Widespread introgression across a phylogeny of 155 Drosophila genomes
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing
We introduce the 12th version of the Molecular Evolutionary Genetics Analysis (MEGA12)
software. This latest version brings many significant improvements by reducing the …
software. This latest version brings many significant improvements by reducing the …
Seaview version 5: a multiplatform software for multiple sequence alignment, molecular phylogenetic analyses, and tree reconciliation
We present Seaview version 5, a multiplatform program to perform multiple alignment and
phylogenetic tree building from molecular sequence data. Seaview provides network access …
phylogenetic tree building from molecular sequence data. Seaview provides network access …
Engineering functional thermostable proteins using ancestral sequence reconstruction
RES Thomson, SE Carrera-Pacheco… - Journal of Biological …, 2022 - ASBMB
Natural proteins are often only slightly more stable in the native state than the denatured
state, and an increase in environmental temperature can easily shift the balance toward …
state, and an increase in environmental temperature can easily shift the balance toward …
Sequencing herbarium specimens of a common detrimental plant disease (powdery mildew)
Powdery mildew (Erysiphaceae) is a detrimental plant disease that occurs on a variety of
economically important crops. Powdery mildew consists of over 873 species of fungal …
economically important crops. Powdery mildew consists of over 873 species of fungal …
A new order, Entrophosporales, and three new Entrophospora species in Glomeromycota
J Błaszkowski, M Sánchez-García, P Niezgoda… - Frontiers in …, 2022 - frontiersin.org
As a result of phylogenomic, phylogenetic, and morphological analyses of members of the
genus Claroideoglomus, four potential new glomoid spore-producing species and …
genus Claroideoglomus, four potential new glomoid spore-producing species and …