Exploring the diversity of plant metabolism

C Fang, AR Fernie, J Luo - Trends in Plant Science, 2019 - cell.com
Plants produce a huge array of metabolites, far more than those produced by most other
organisms. Unraveling this diversity and its underlying genetic variation has attracted …

Phenylpropanoid biosynthesis

T Vogt - Molecular plant, 2010 - cell.com
The general phenylpropanoid metabolism generates an enormous array of secondary
metabolites based on the few intermediates of the shikimate pathway as the core unit. The …

A dirigent family protein confers variation of Casparian strip thickness and salt tolerance in maize

Y Wang, Y Cao, X Liang, J Zhuang, X Wang… - Nature …, 2022 - nature.com
Plant salt-stress response involves complex physiological processes. Previous studies have
shown that some factors promote salt tolerance only under high transpiring condition, thus …

A novel integrated method for large-scale detection, identification, and quantification of widely targeted metabolites: application in the study of rice metabolomics

W Chen, L Gong, Z Guo, W Wang, H Zhang, X Liu, S Yu… - Molecular plant, 2013 - cell.com
Liquid chromatography–mass spectrometry (LC–MS)-based metabolomics has been
facilitated by the construction of MS 2 spectral tag (MS2T) library from the total scan ESI …

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

C Kuhl, R Tautenhahn, C Bottcher, TR Larson… - Analytical …, 2012 - ACS Publications
Liquid chromatography coupled to mass spectrometry is routinely used for metabolomics
experiments. In contrast to the fairly routine and automated data acquisition steps …

Integrated metabolomics for abiotic stress responses in plants

R Nakabayashi, K Saito - Current opinion in plant biology, 2015 - Elsevier
Highlights•Plants are considered to biosynthesize specialized metabolites to adapt to
environmental stresses.•The function of metabolites induced by abiotic stress in vivo is …

Highly sensitive feature detection for high resolution LC/MS

R Tautenhahn, C Böttcher, S Neumann - BMC bioinformatics, 2008 - Springer
Background Liquid chromatography coupled to mass spectrometry (LC/MS) is an important
analytical technology for eg metabolomics experiments. Determining the boundaries …

[HTML][HTML] An assessment of quality assurance/quality control efforts in high resolution mass spectrometry non-target workflows for analysis of environmental samples

B Schulze, Y Jeon, S Kaserzon, AL Heffernan… - TrAC Trends in …, 2020 - Elsevier
The application of non-target analysis (NTA), a comprehensive approach to characterize
unknown chemicals, including chemicals of emerging concern has seen a steady increase …

Metabolic engineering of novel lignin in biomass crops

R Vanholme, K Morreel, C Darrah, P Oyarce… - New …, 2012 - Wiley Online Library
Lignin, a phenolic polymer in the secondary wall, is the major cause of lignocellulosic
biomass recalcitrance to efficient industrial processing. From an applications perspective, it …

Metabolomics for functional genomics, systems biology, and biotechnology

K Saito, F Matsuda - Annual review of plant biology, 2010 - annualreviews.org
Metabolomics now plays a significant role in fundamental plant biology and applied
biotechnology. Plants collectively produce a huge array of chemicals, far more than are …