[HTML][HTML] Reproducibility and replicability of rodent phenoty** in preclinical studies
The scientific community is increasingly concerned with the proportion of published
“discoveries” that are not replicated in subsequent studies. The field of rodent behavioral …
“discoveries” that are not replicated in subsequent studies. The field of rodent behavioral …
Toward the Geoscience Paper of the Future: Best practices for documenting and sharing research from data to software to provenance
Geoscientists now live in a world rich with digital data and methods, and their computational
research cannot be fully captured in traditional publications. The Geoscience Paper of the …
research cannot be fully captured in traditional publications. The Geoscience Paper of the …
RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
Nextflow enables reproducible computational workflows
The increasing complexity of readouts for omics analyses goes hand-in-hand with concerns
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
An introduction to Docker for reproducible research
As computational work becomes more and more integral to many aspects of scientific
research, computational reproducibility has become an issue of increasing importance to …
research, computational reproducibility has become an issue of increasing importance to …
Identifying and overcoming threats to reproducibility, replicability, robustness, and generalizability in microbiome research
The “reproducibility crisis” in science affects microbiology as much as any other area of
inquiry, and microbiologists have long struggled to make their research reproducible. We …
inquiry, and microbiologists have long struggled to make their research reproducible. We …
Terminologies for reproducible research
Reproducible research---by its many names---has come to be regarded as a key concern
across disciplines and stakeholder groups. Funding agencies and journals, professional …
across disciplines and stakeholder groups. Funding agencies and journals, professional …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Enhancing reproducibility for computational methods
Over the past two decades, computational methods have radically changed the ability of
researchers from all areas of scholarship to process and analyze data and to simulate …
researchers from all areas of scholarship to process and analyze data and to simulate …
Digital terrain modeling
This article examines how the methods and data sources used to generate DEMs and
calculate land surface parameters have changed over the past 25years. The primary goal is …
calculate land surface parameters have changed over the past 25years. The primary goal is …