Off-target effects in CRISPR/Cas9 gene editing
C Guo, X Ma, F Gao, Y Guo - Frontiers in bioengineering and …, 2023 - frontiersin.org
Gene editing stands for the methods to precisely make changes to a specific nucleic acid
sequence. With the recent development of the clustered regularly interspaced short …
sequence. With the recent development of the clustered regularly interspaced short …
Latest developed strategies to minimize the off-target effects in CRISPR-Cas-mediated genome editing
Gene editing that makes target gene modification in the genome by deletion or addition has
revolutionized the era of biomedicine. Clustered regularly interspaced short palindromic …
revolutionized the era of biomedicine. Clustered regularly interspaced short palindromic …
Chromothripsis as an on-target consequence of CRISPR–Cas9 genome editing
Genome editing has therapeutic potential for treating genetic diseases and cancer.
However, the currently most practicable approaches rely on the generation of DNA double …
However, the currently most practicable approaches rely on the generation of DNA double …
CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens
JP Concordet, M Haeussler - Nucleic acids research, 2018 - academic.oup.com
CRISPOR. org is a web tool for genome editing experiments with the CRISPR–Cas9 system.
It finds guide RNAs in an input sequence and ranks them according to different scores that …
It finds guide RNAs in an input sequence and ranks them according to different scores that …
Base-resolution models of transcription-factor binding reveal soft motif syntax
Ž Avsec, M Weilert, A Shrikumar, S Krueger… - Nature …, 2021 - nature.com
The arrangement (syntax) of transcription factor (TF) binding motifs is an important part of the
cis-regulatory code, yet remains elusive. We introduce a deep learning model, BPNet, that …
cis-regulatory code, yet remains elusive. We introduce a deep learning model, BPNet, that …
CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations
I Höijer, A Emmanouilidou, R Östlund… - Nature …, 2022 - nature.com
CRISPR-Cas9 genome editing has potential to cure diseases without current treatments, but
therapies must be safe. Here we show that CRISPR-Cas9 editing can introduce unintended …
therapies must be safe. Here we show that CRISPR-Cas9 editing can introduce unintended …
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
INTRODUCTION To combat invading pathogens, cells develop an adaptive immune
response by changing their own genetic information. In vertebrates, the generation of …
response by changing their own genetic information. In vertebrates, the generation of …
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR
M Haeussler, K Schönig, H Eckert, A Eschstruth… - Genome biology, 2016 - Springer
Background The success of the CRISPR/Cas9 genome editing technique depends on the
choice of the guide RNA sequence, which is facilitated by various websites. Despite the …
choice of the guide RNA sequence, which is facilitated by various websites. Despite the …
Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion
Z Shimatani, S Kashojiya, M Takayama, R Terada… - Nature …, 2017 - nature.com
We applied a fusion of CRISPR-Cas9 and activation-induced cytidine deaminase (Target-
AID) for point mutagenesis at genomic regions specified by single guide RNAs (sgRNAs) in …
AID) for point mutagenesis at genomic regions specified by single guide RNAs (sgRNAs) in …
DeepCRISPR: optimized CRISPR guide RNA design by deep learning
A major challenge for effective application of CRISPR systems is to accurately predict the
single guide RNA (sgRNA) on-target knockout efficacy and off-target profile, which would …
single guide RNA (sgRNA) on-target knockout efficacy and off-target profile, which would …