Regulation by small RNAs in bacteria: expanding frontiers
Research on the discovery and characterization of small, regulatory RNAs in bacteria has
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
B Görke, J Stülke - Nature Reviews Microbiology, 2008 - nature.com
Most bacteria can selectively use substrates from a mixture of different carbon sources. The
presence of preferred carbon sources prevents the expression, and often also the activity, of …
presence of preferred carbon sources prevents the expression, and often also the activity, of …
Hfq and its constellation of RNA
J Vogel, BF Luisi - Nature Reviews Microbiology, 2011 - nature.com
Hfq is an RNA-binding protein that is common to diverse bacterial lineages and has key
roles in the control of gene expression. By facilitating the pairing of small RNAs with their …
roles in the control of gene expression. By facilitating the pairing of small RNAs with their …
Small RNAs, large networks: posttranscriptional regulons in gram-negative bacteria
Small regulatory RNA (sRNAs) are key mediators of posttranscriptional gene control in
bacteria. Assisted by RNA-binding proteins, a single sRNA often modulates the expression …
bacteria. Assisted by RNA-binding proteins, a single sRNA often modulates the expression …
Bacterial small RNA regulators: versatile roles and rapidly evolving variations
S Gottesman, G Storz - Cold Spring Harbor perspectives …, 2011 - cshperspectives.cshlp.org
Small RNA regulators (sRNAs) have been identified in a wide range of bacteria and found to
play critical regulatory roles in many processes. The major families of sRNAs include true …
play critical regulatory roles in many processes. The major families of sRNAs include true …
Small RNAs in bacteria and archaea: who they are, what they do, and how they do it
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
The IntaRNA algorithm enables fast and accurate prediction of RNA–RNA hybrids by
incorporating seed constraints and interaction site accessibility. Here, we introduce …
incorporating seed constraints and interaction site accessibility. Here, we introduce …
Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
The last few decades have led to an explosion in our understanding of the major roles that
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …
In vivo cleavage map illuminates the central role of RNase E in coding and non-coding RNA pathways
Understanding RNA processing and turnover requires knowledge of cleavages by major
endoribonucleases within a living cell. We have employed TIER-seq (transiently inactivating …
endoribonucleases within a living cell. We have employed TIER-seq (transiently inactivating …
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
Recent advances in high-throughput pyrosequencing (HTPS) technology now allow a
thorough analysis of RNA bound to cellular proteins, and, therefore, of post-transcriptional …
thorough analysis of RNA bound to cellular proteins, and, therefore, of post-transcriptional …