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Transformer-based deep learning for predicting protein properties in the life sciences
Recent developments in deep learning, coupled with an increasing number of sequenced
proteins, have led to a breakthrough in life science applications, in particular in protein …
proteins, have led to a breakthrough in life science applications, in particular in protein …
Attention is all you need: utilizing attention in AI-enabled drug discovery
Recently, attention mechanism and derived models have gained significant traction in drug
development due to their outstanding performance and interpretability in handling complex …
development due to their outstanding performance and interpretability in handling complex …
AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism
The accurate prediction of drug-target affinity (DTA) is a crucial step in drug discovery and
design. Traditional experiments are very expensive and time-consuming. Recently, deep …
design. Traditional experiments are very expensive and time-consuming. Recently, deep …
[HTML][HTML] Advancing drug discovery with deep attention neural networks
A Lavecchia - Drug Discovery Today, 2024 - Elsevier
In the dynamic field of drug discovery, deep attention neural networks are revolutionizing our
approach to complex data. This review explores the attention mechanism and its extended …
approach to complex data. This review explores the attention mechanism and its extended …
GPCNDTA: prediction of drug-target binding affinity through cross-attention networks augmented with graph features and pharmacophores
Drug-target affinity prediction is a challenging task in drug discovery. The latest
computational models have limitations in mining edge information in molecule graphs …
computational models have limitations in mining edge information in molecule graphs …
DataDTA: a multi-feature and dual-interaction aggregation framework for drug–target binding affinity prediction
Motivation Accurate prediction of drug–target binding affinity (DTA) is crucial for drug
discovery. The increase in the publication of large-scale DTA datasets enables the …
discovery. The increase in the publication of large-scale DTA datasets enables the …
PMF-CPI: assessing drug selectivity with a pretrained multi-functional model for compound–protein interactions
Compound–protein interactions (CPI) play significant roles in drug development. To avoid
side effects, it is also crucial to evaluate drug selectivity when binding to different targets …
side effects, it is also crucial to evaluate drug selectivity when binding to different targets …
[HTML][HTML] A brief review of protein–ligand interaction prediction
The task of identifying protein–ligand interactions (PLIs) plays a prominent role in the field of
drug discovery. However, it is infeasible to identify potential PLIs via costly and laborious in …
drug discovery. However, it is infeasible to identify potential PLIs via costly and laborious in …
Application of transformers in cheminformatics
KD Luong, A Singh - Journal of Chemical Information and …, 2024 - ACS Publications
By accelerating time-consuming processes with high efficiency, computing has become an
essential part of many modern chemical pipelines. Machine learning is a class of computing …
essential part of many modern chemical pipelines. Machine learning is a class of computing …
Predicting the hallucinogenic potential of molecules using artificial intelligence
F Urbina, T Jones, JS Harris, SH Snyder… - ACS Chemical …, 2024 - ACS Publications
The development of new drugs addressing serious mental health and other disorders
should avoid the psychedelic experience. Analogs of psychedelic drugs can have clinical …
should avoid the psychedelic experience. Analogs of psychedelic drugs can have clinical …