[HTML][HTML] One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages

F González-Candelas, MA Shaw, T Phan… - Infection, Genetics and …, 2021 - Elsevier
The COVID-19 pandemic was officially declared on March 11 th, 2020. Since the very
beginning, the spread of the virus has been tracked nearly in real-time by worldwide …

Evolution and epidemic spread of SARS-CoV-2 in Brazil

DS Candido, IM Claro, JG De Jesus, WM Souza… - Science, 2020 - science.org
Brazil currently has one of the fastest-growing severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) epidemics in the world. Because of limited available data …

Genomic characterization of a novel SARS-CoV-2 lineage from Rio de Janeiro, Brazil

CM Voloch, R da Silva Francisco Jr… - Journal of …, 2021 - journals.asm.org
Almost simultaneously, several studies reported the emergence of novel severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) lineages characterized by distinct …

Temporal signal and the phylodynamic threshold of SARS-CoV-2

S Duchene, L Featherstone… - Virus …, 2020 - academic.oup.com
The ongoing SARS-CoV-2 outbreak marks the first time that large amounts of genome
sequence data have been generated and made publicly available in near real time. Early …

Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic

Y Turakhia, B Thornlow, AS Hinrichs, N De Maio… - Nature …, 2021 - nature.com
As the SARS-CoV-2 virus spreads through human populations, the unprecedented
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence

MUG Kraemer, V Hill, C Ruis, S Dellicour, S Bajaj… - Science, 2021 - science.org
Understanding the causes and consequences of the emergence of severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) variants of concern is crucial to pandemic control yet …

Untangling introductions and persistence in COVID-19 resurgence in Europe

P Lemey, N Ruktanonchai, SL Hong, V Colizza… - Nature, 2021 - nature.com
After the first wave of SARS-CoV-2 infections in spring 2020, Europe experienced a
resurgence of the virus starting in late summer 2020 that was deadlier and more difficult to …

A recurrent mutation at position 26340 of SARS-CoV-2 is associated with failure of the E gene quantitative reverse transcription-PCR utilized in a commercial dual …

M Artesi, S Bontems, P Göbbels… - Journal of clinical …, 2020 - journals.asm.org
Control of the ongoing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
pandemic requires accurate laboratory testing to identify infected individuals while also …

The emergence of SARS-CoV-2 variants of concern is driven by acceleration of the substitution rate

JH Tay, AF Porter, W Wirth… - Molecular Biology and …, 2022 - academic.oup.com
The ongoing SARS-CoV-2 pandemic has seen an unprecedented amount of rapidly
generated genome data. These data have revealed the emergence of lineages with …

[HTML][HTML] Early introductions and transmission of SARS-CoV-2 variant B. 1.1. 7 in the United States

T Alpert, AF Brito, E Lasek-Nesselquist, J Rothman… - Cell, 2021 - cell.com
The emergence and spread of SARS-CoV-2 lineage B. 1.1. 7, first detected in the United
Kingdom, has become a global public health concern because of its increased …