Image processing tools for petabyte-scale light sheet microscopy data
Light sheet microscopy is a powerful technique for high-speed three-dimensional imaging of
subcellular dynamics and large biological specimens. However, it often generates datasets …
subcellular dynamics and large biological specimens. However, it often generates datasets …
High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology with Cellos
Abstract Three-dimensional (3D) organoid cultures are flexible systems to interrogate
cellular growth, morphology, multicellular spatial architecture, and cellular interactions in …
cellular growth, morphology, multicellular spatial architecture, and cellular interactions in …
ChromatinHD connects single-cell DNA accessibility and conformation to gene expression through scale-adaptive machine learning
Gene regulation is inherently multiscale, but scale-adaptive machine learning methods that
fully exploit this property in single-nucleus accessibility data are still lacking. Here, we …
fully exploit this property in single-nucleus accessibility data are still lacking. Here, we …
[PDF][PDF] Neurosift: DANDI exploration and NWB visualization in the browser
Neurosift, a browser-based visualization tool, is designed for the interactive exploration of
Neurodata Without Borders (NWB) files, whether stored locally, on remote servers, or within …
Neurodata Without Borders (NWB) files, whether stored locally, on remote servers, or within …
Learning precise segmentation of neurofibrillary tangles from rapid manual point annotations
S Ghandian, L Albarghouthi, K Nava, SRR Sharma… - bioRxiv, 2024 - biorxiv.org
Accumulation of abnormal tau protein into neurofibrillary tangles (NFTs) is a pathologic
hallmark of Alzheimer disease. Accurate and efficient detection and quantification of NFTs in …
hallmark of Alzheimer disease. Accurate and efficient detection and quantification of NFTs in …
A harmonized and interoperable format for storing and processing polysomnography data
Polysomnography (PSG) data is recorded and stored in various formats depending on the
recording software. Although the PSG data can usually be exported to open formats, such as …
recording software. Although the PSG data can usually be exported to open formats, such as …
ITS_LIVE: A Cloud-Native Approach to Monitoring Glaciers From Space
NASA's ITS_LIVE project delivers information on global glacier dynamics and provides
historical context for climate change with a record of how every glacier in the world has …
historical context for climate change with a record of how every glacier in the world has …
Using a Deployable Analysis Environment to Study Continental-Scale Phenology at High-Spatial Resolution
The increasing availability of large open datasets and computational resources offers
unprecedented opportunities for new insight and discoveries. However, researchers are …
unprecedented opportunities for new insight and discoveries. However, researchers are …
SARXarray and STMtools: Open-Source Python Libraries for InSAR Data Processing and Analysis
O Ku, F Alidoost, P Chandramouli… - IGARSS 2024-2024 …, 2024 - ieeexplore.ieee.org
We introduce SARXarray and STMtools, two python libraries designed to support the
exploitation of modern Interferometric Synthetic Aperture Radar (InSAR) data by enabling …
exploitation of modern Interferometric Synthetic Aperture Radar (InSAR) data by enabling …