Soil and environmental issues in sandy soils
Sandy soils are widely distributed across the world. Due to the growing global population
and urbanization, these soils are increasingly used to provide food, feed, fiber, energy, and …
and urbanization, these soils are increasingly used to provide food, feed, fiber, energy, and …
A guide to conquer the biological network era using graph theory
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …
of binary interactions or relations between different bioentities. In this article, we discuss the …
Hiplot: a comprehensive and easy-to-use web service for boosting publication-ready biomedical data visualization
Complex biomedical data generated during clinical, omics and mechanism-based
experiments have increasingly been exploited through cloud-and visualization-based data …
experiments have increasingly been exploited through cloud-and visualization-based data …
[PDF][PDF] pyGenomeTracks: reproducible plots for multivariate genomic datasets
Motivation Generating publication ready plots to display multiple genomic tracks can pose a
serious challenge. Making desirable and accurate figures requires considerable effort. This …
serious challenge. Making desirable and accurate figures requires considerable effort. This …
HiGlass: web-based visual exploration and analysis of genome interaction maps
We present HiGlass, an open source visualization tool built on web technologies that
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
Integrated omics: tools, advances and future approaches
With the rapid adoption of high-throughput omic approaches to analyze biological samples
such as genomics, transcriptomics, proteomics, and metabolomics, each analysis can …
such as genomics, transcriptomics, proteomics, and metabolomics, each analysis can …
FunRich: An open access standalone functional enrichment and interaction network analysis tool
As high‐throughput techniques including proteomics become more accessible to individual
laboratories, there is an urgent need for a user‐friendly bioinformatics analysis system …
laboratories, there is an urgent need for a user‐friendly bioinformatics analysis system …
Protter: interactive protein feature visualization and integration with experimental proteomic data
The ability to integrate and visualize experimental proteomic evidence in the context of rich
protein feature annotations represents an unmet need of the proteomics community. Here …
protein feature annotations represents an unmet need of the proteomics community. Here …
Spatially resolved, highly multiplexed RNA profiling in single cells
INTRODUCTION The copy number and intracellular localization of RNA are important
regulators of gene expression. Measurement of these properties at the transcriptome scale …
regulators of gene expression. Measurement of these properties at the transcriptome scale …
Single-cell sequencing-based technologies will revolutionize whole-organism science
The unabated progress in next-generation sequencing technologies is fostering a wave of
new genomics, epigenomics, transcriptomics and proteomics technologies. These …
new genomics, epigenomics, transcriptomics and proteomics technologies. These …