Soil and environmental issues in sandy soils

J Huang, AE Hartemink - Earth-Science Reviews, 2020 - Elsevier
Sandy soils are widely distributed across the world. Due to the growing global population
and urbanization, these soils are increasingly used to provide food, feed, fiber, energy, and …

A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

Hiplot: a comprehensive and easy-to-use web service for boosting publication-ready biomedical data visualization

J Li, B Miao, S Wang, W Dong, H Xu, C Si… - Briefings in …, 2022 - academic.oup.com
Complex biomedical data generated during clinical, omics and mechanism-based
experiments have increasingly been exploited through cloud-and visualization-based data …

[PDF][PDF] pyGenomeTracks: reproducible plots for multivariate genomic datasets

L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj… - …, 2021 - academic.oup.com
Motivation Generating publication ready plots to display multiple genomic tracks can pose a
serious challenge. Making desirable and accurate figures requires considerable effort. This …

HiGlass: web-based visual exploration and analysis of genome interaction maps

P Kerpedjiev, N Abdennur, F Lekschas, C McCallum… - Genome biology, 2018 - Springer
We present HiGlass, an open source visualization tool built on web technologies that
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …

Integrated omics: tools, advances and future approaches

BB Misra, C Langefeld, M Olivier… - Journal of molecular …, 2019 - jme.bioscientifica.com
With the rapid adoption of high-throughput omic approaches to analyze biological samples
such as genomics, transcriptomics, proteomics, and metabolomics, each analysis can …

FunRich: An open access standalone functional enrichment and interaction network analysis tool

M Pathan, S Keerthikumar, CS Ang, L Gangoda… - …, 2015 - Wiley Online Library
As high‐throughput techniques including proteomics become more accessible to individual
laboratories, there is an urgent need for a user‐friendly bioinformatics analysis system …

Protter: interactive protein feature visualization and integration with experimental proteomic data

U Omasits, CH Ahrens, S Müller, B Wollscheid - Bioinformatics, 2014 - academic.oup.com
The ability to integrate and visualize experimental proteomic evidence in the context of rich
protein feature annotations represents an unmet need of the proteomics community. Here …

Spatially resolved, highly multiplexed RNA profiling in single cells

KH Chen, AN Boettiger, JR Moffitt, S Wang, X Zhuang - Science, 2015 - science.org
INTRODUCTION The copy number and intracellular localization of RNA are important
regulators of gene expression. Measurement of these properties at the transcriptome scale …

Single-cell sequencing-based technologies will revolutionize whole-organism science

E Shapiro, T Biezuner, S Linnarsson - Nature Reviews Genetics, 2013 - nature.com
The unabated progress in next-generation sequencing technologies is fostering a wave of
new genomics, epigenomics, transcriptomics and proteomics technologies. These …