Historical perspective, development and applications of next-generation sequencing in plant virology

M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …

Next-generation sequencing and genome editing in plant virology

A Hadidi, R Flores, T Candresse, M Barba - Frontiers in microbiology, 2016 - frontiersin.org
Next-generation sequencing (NGS) has been applied to plant virology since 2009. NGS
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …

The role of miRNA in plant–virus interaction: a review

AA Mengistu, TA Tenkegna - Molecular Biology Reports, 2021 - Springer
Plant viruses affect crop production both quantitatively and qualitatively. The viral genome
consists of either DNA or RNA. However, most plant viruses are positive single-strand RNA …

Evidence for an RNAi-independent role of Arabidopsis DICER-LIKE2 in growth inhibition and basal antiviral resistance

CPS Nielsen, L Arribas-Hernández, L Han… - The Plant …, 2024 - academic.oup.com
Flowering plant genomes encode four or five DICER-LIKE (DCL) enzymes that produce
small interfering RNAs (siRNAs) and microRNAs, which function in RNA interference (RNAi) …

Rootstock‐to‐scion transfer of transgene‐derived small interfering RNA s and their effect on virus resistance in nontransgenic sweet cherry

D Zhao, G Song - Plant biotechnology journal, 2014 - Wiley Online Library
Small interfering RNA s (si RNA s) are silencing signals in plants. Virus‐resistant transgenic
rootstocks developed through si RNA‐mediated gene silencing may enhance virus …

Integrating CRISPR-Cas and next generation sequencing in plant virology

M Mushtaq, AA Dar, U Basu, BA Bhat, RA Mir… - Frontiers in …, 2021 - frontiersin.org
Plant pathology has been revolutionized by the emergence and intervention of next-
generation sequencing technologies (NGS) which provide a fast, cost-effective, and reliable …

GmPARPs differentially regulate the drought and heat stress tolerance in soybean

R Tiwari, AK Singh, MV Rajam - Plant Growth Regulation, 2023 - Springer
Soybean is a valuable crop that provides protein and oil. The soybean yield and quality are
affected by abiotic stresses viz. drought and heat stress. The process of poly (ADP-ribosyl) …

Atypical molecular features of RNA silencing against the phloem-restricted polerovirus TuYV

M Clavel, E Lechner, M Incarbone… - Nucleic Acids …, 2021 - academic.oup.com
In plants and some animal lineages, RNA silencing is an efficient and adaptable defense
mechanism against viruses. To counter it, viruses encode suppressor proteins that interfere …

Identification of a new enamovirus associated with citrus vein enation disease by deep sequencing of small RNAs

MC Vives, K Velázquez, JA Pina, P Moreno… - …, 2013 - Am Phytopath Society
To identify the causal agent of citrus vein enation disease, we examined by deep
sequencing (Solexa-Illumina) the small RNA (sRNA) fraction from infected and healthy Etrog …

Differential Expression of Tomato Spotted Wilt Virus-Derived Viral Small RNAs in Infected Commercial and Experimental Host Plants

N Mitter, V Koundal, S Williams, H Pappu - PLoS One, 2013 - journals.plos.org
Background Viral small RNAs (vsiRNAs) in the infected host can be generated from viral
double-stranded RNA replicative intermediates, self-complementary regions of the viral …