Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods

ZA Clarke, TS Andrews, J Atif, D Pouyabahar… - Nature protocols, 2021 - nature.com
Single-cell transcriptomics can profile thousands of cells in a single experiment and identify
novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard …

Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

Cancer-associated fibroblast-specific lncRNA LINC01614 enhances glutamine uptake in lung adenocarcinoma

T Liu, C Han, P Fang, Z Ma, X Wang, H Chen… - Journal of hematology & …, 2022 - Springer
Background Besides featured glucose consumption, recent studies reveal that cancer cells
might prefer “addicting” specific energy substrates from the tumor microenvironment (TME); …

[HTML][HTML] Resurrection of endogenous retroviruses during aging reinforces senescence

X Liu, Z Liu, Z Wu, J Ren, Y Fan, L Sun, G Cao, Y Niu… - Cell, 2023 - cell.com
Whether and how certain transposable elements with viral origins, such as endogenous
retroviruses (ERVs) dormant in our genomes, can become awakened and contribute to the …

Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice

G Sharon, NJ Cruz, DW Kang, MJ Gandal, B Wang… - Cell, 2019 - cell.com
Autism spectrum disorder (ASD) manifests as alterations in complex human behaviors
including social communication and stereotypies. In addition to genetic risks, the gut …

The contribution of inflammatory astrocytes to BBB impairments in a brain-chip model of Parkinson's disease

A de Rus Jacquet, M Alpaugh, HL Denis… - Nature …, 2023 - nature.com
Astrocyte dysfunction has previously been linked to multiple neurodegenerative disorders
including Parkinson's disease (PD). Among their many roles, astrocytes are mediators of the …

The molecular and functional landscape of resistance to immune checkpoint blockade in melanoma

SY Lim, E Shklovskaya, JH Lee, B Pedersen… - Nature …, 2023 - nature.com
Resistance to immune checkpoint inhibitor therapies in melanoma is common and remains
an intractable clinical challenge. In this study, we comprehensively profile immune …

IL7 increases targeted lipid nanoparticle–mediated mRNA expression in T cells in vitro and in vivo by enhancing T cell protein translation

CM Tilsed, BA Sadiq, TE Papp… - Proceedings of the …, 2024 - pnas.org
The use of lipid nanoparticles (LNP) to encapsulate and deliver mRNA has become an
important therapeutic advance. In addition to vaccines, LNP-mRNA can be used in many …