[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …

KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …

Environmental DNA metabarcoding: A novel method for biodiversity monitoring of marine fish communities

M Miya - Annual Review of Marine Science, 2022 - annualreviews.org
Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It
has received increased attention as an indirect marker for biodiversity monitoring. This …

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

BE Deagle, AC Thomas, JC McInnes… - Molecular …, 2019 - Wiley Online Library
Advances in DNA sequencing technology have revolutionized the field of molecular analysis
of trophic interactions, and it is now possible to recover counts of food DNA sequences from …

Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring

J Pawlowski, L Apothéloz‐Perret‐Gentil… - Molecular …, 2020 - Wiley Online Library
The last decade brought a spectacular development of so‐called environmental (e) DNA
studies. In general,“environmental DNA” is defined as DNA isolated from environmental …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Non‐specific amplification compromises environmental DNA metabarcoding with COI

RA Collins, J Bakker, OS Wangensteen… - Methods in Ecology …, 2019 - Wiley Online Library
Metabarcoding extra‐organismal DNA from environmental samples is now a key technique
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …

Environmental RNA: a revolution in ecological resolution?

MC Yates, AM Derry, ME Cristescu - Trends in Ecology & Evolution, 2021 - cell.com
Current advancements in environmental RNA (eRNA) exploit its relatively fast turnover rate
relative to environmental DNA (eDNA) to assess 'metabolically active'or temporally/spatially …

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

Understanding PCR processes to draw meaningful conclusions from environmental DNA studies

RP Kelly, AO Shelton, R Gallego - Scientific reports, 2019 - nature.com
As environmental DNA (eDNA) studies have grown in popularity for use in ecological
applications, it has become clear that their results differ in significant ways from those of …

Environmental DNA illuminates the dark diversity of sharks

G Boussarie, J Bakker, OS Wangensteen, S Mariani… - Science …, 2018 - science.org
In the era of “Anthropocene defaunation,” large species are often no longer detected in
habitats where they formerly occurred. However, it is unclear whether this apparent missing …