Machine learning for medical imaging: methodological failures and recommendations for the future

G Varoquaux, V Cheplygina - NPJ digital medicine, 2022 - nature.com
Research in computer analysis of medical images bears many promises to improve patients'
health. However, a number of systematic challenges are slowing down the progress of the …

Understanding metric-related pitfalls in image analysis validation

A Reinke, MD Tizabi, M Baumgartner, M Eisenmann… - Nature …, 2024 - nature.com
Validation metrics are key for tracking scientific progress and bridging the current chasm
between artificial intelligence research and its translation into practice. However, increasing …

An extensive study on pre-trained models for program understanding and generation

Z Zeng, H Tan, H Zhang, J Li, Y Zhang… - Proceedings of the 31st …, 2022 - dl.acm.org
Automatic program understanding and generation techniques could significantly advance
the productivity of programmers and have been widely studied by academia and industry …

Pubmedclip: How much does clip benefit visual question answering in the medical domain?

S Eslami, C Meinel, G De Melo - Findings of the Association for …, 2023 - aclanthology.org
Abstract Contrastive Language–Image Pre-training (CLIP) has shown remarkable success
in learning with cross-modal supervision from extensive amounts of image–text pairs …

An empirical study of pre-trained model reuse in the hugging face deep learning model registry

W Jiang, N Synovic, M Hyatt… - 2023 IEEE/ACM 45th …, 2023 - ieeexplore.ieee.org
Deep Neural Networks (DNNs) are being adopted as components in software systems.
Creating and specializing DNNs from scratch has grown increasingly difficult as state-of-the …

Common limitations of image processing metrics: A picture story

A Reinke, MD Tizabi, CH Sudre, M Eisenmann… - arxiv preprint arxiv …, 2021 - arxiv.org
While the importance of automatic image analysis is continuously increasing, recent meta-
research revealed major flaws with respect to algorithm validation. Performance metrics are …

A software engineering perspective on engineering machine learning systems: State of the art and challenges

G Giray - Journal of Systems and Software, 2021 - Elsevier
Context: Advancements in machine learning (ML) lead to a shift from the traditional view of
software development, where algorithms are hard-coded by humans, to ML systems …

Does clip benefit visual question answering in the medical domain as much as it does in the general domain?

S Eslami, G de Melo, C Meinel - arxiv preprint arxiv:2112.13906, 2021 - arxiv.org
Contrastive Language--Image Pre-training (CLIP) has shown remarkable success in
learning with cross-modal supervision from extensive amounts of image--text pairs collected …

[HTML][HTML] Recent progress in the discovery and design of antimicrobial peptides using traditional machine learning and deep learning

J Yan, J Cai, B Zhang, Y Wang, DF Wong, SWI Siu - Antibiotics, 2022 - mdpi.com
Antimicrobial resistance has become a critical global health problem due to the abuse of
conventional antibiotics and the rise of multi-drug-resistant microbes. Antimicrobial peptides …

Randomness in neural network training: Characterizing the impact of tooling

D Zhuang, X Zhang, S Song… - Proceedings of Machine …, 2022 - proceedings.mlsys.org
The quest for determinism in machine learning has disproportionately focused on
characterizing the impact of noise introduced by algorithmic design choices. In this work, we …