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[HTML][HTML] A 25-year odyssey of genomic technology advances and structural variant discovery
D Porubsky, EE Eichler - Cell, 2024 - cell.com
This perspective focuses on advances in genome technology over the last 25 years and
their impact on germline variant discovery within the field of human genetics. The field has …
their impact on germline variant discovery within the field of human genetics. The field has …
Genomic variant benchmark: if you cannot measure it, you cannot improve it
Genomic benchmark datasets are essential to driving the field of genomics and
bioinformatics. They provide a snapshot of the performances of sequencing technologies …
bioinformatics. They provide a snapshot of the performances of sequencing technologies …
Building pangenome graphs
E Garrison, A Guarracino, S Heumos, F Villani, Z Bao… - Nature …, 2024 - nature.com
Pangenome graphs can represent all variation between multiple reference genomes, but
current approaches to build them exclude complex sequences or are based upon a single …
current approaches to build them exclude complex sequences or are based upon a single …
A draft human pangenome reference
Abstract Here the Human Pangenome Reference Consortium presents a first draft of the
human pangenome reference. The pangenome contains 47 phased, diploid assemblies …
human pangenome reference. The pangenome contains 47 phased, diploid assemblies …
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range
Q Lian, B Huettel, B Walkemeier, B Mayjonade… - Nature …, 2024 - nature.com
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing
to its broad geographical distribution and adaptation to diverse environments, developed …
to its broad geographical distribution and adaptation to diverse environments, developed …
Structural polymorphism and diversity of human segmental duplications
H Jeong, PC Dishuck, DA Yoo, WT Harvey… - Nature …, 2025 - nature.com
Segmental duplications (SDs) contribute significantly to human disease, evolution and
diversity but have been difficult to resolve at the sequence level. We present a population …
diversity but have been difficult to resolve at the sequence level. We present a population …
Exploring gene content with pangene graphs
Motivation The gene content regulates the biology of an organism. It varies between species
and between individuals of the same species. Although tools have been developed to …
and between individuals of the same species. Although tools have been developed to …
T2T-YAO: a telomere-to-telomere assembled diploid reference genome for Han Chinese
Y He, Y Chu, S Guo, J Hu, R Li, Y Zheng… - Genomics …, 2023 - academic.oup.com
Since its initial release in 2001, the human reference genome has undergone continuous
improvement in quality, and the recently released telomere-to-telomere (T2T) version—T2T …
improvement in quality, and the recently released telomere-to-telomere (T2T) version—T2T …
Pangenome graphs improve the analysis of structural variants in rare genetic diseases
Rare DNA alterations that cause heritable diseases are only partially resolvable by clinical
next-generation sequencing due to the difficulty of detecting structural variation (SV) in all …
next-generation sequencing due to the difficulty of detecting structural variation (SV) in all …
Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation
Previous studies suggested that the copy number of the human salivary amylase gene,
AMY1, correlates with starch-rich diets. However, evolutionary analyses are hampered by …
AMY1, correlates with starch-rich diets. However, evolutionary analyses are hampered by …