[HTML][HTML] A 25-year odyssey of genomic technology advances and structural variant discovery

D Porubsky, EE Eichler - Cell, 2024 - cell.com
This perspective focuses on advances in genome technology over the last 25 years and
their impact on germline variant discovery within the field of human genetics. The field has …

Genomic variant benchmark: if you cannot measure it, you cannot improve it

S Majidian, DP Agustinho, CS Chin, FJ Sedlazeck… - Genome biology, 2023 - Springer
Genomic benchmark datasets are essential to driving the field of genomics and
bioinformatics. They provide a snapshot of the performances of sequencing technologies …

Building pangenome graphs

E Garrison, A Guarracino, S Heumos, F Villani, Z Bao… - Nature …, 2024 - nature.com
Pangenome graphs can represent all variation between multiple reference genomes, but
current approaches to build them exclude complex sequences or are based upon a single …

A draft human pangenome reference

WW Liao, M Asri, J Ebler, D Doerr, M Haukness… - Nature, 2023 - nature.com
Abstract Here the Human Pangenome Reference Consortium presents a first draft of the
human pangenome reference. The pangenome contains 47 phased, diploid assemblies …

A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range

Q Lian, B Huettel, B Walkemeier, B Mayjonade… - Nature …, 2024 - nature.com
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing
to its broad geographical distribution and adaptation to diverse environments, developed …

Structural polymorphism and diversity of human segmental duplications

H Jeong, PC Dishuck, DA Yoo, WT Harvey… - Nature …, 2025 - nature.com
Segmental duplications (SDs) contribute significantly to human disease, evolution and
diversity but have been difficult to resolve at the sequence level. We present a population …

Exploring gene content with pangene graphs

H Li, M Marin, MR Farhat - Bioinformatics, 2024 - academic.oup.com
Motivation The gene content regulates the biology of an organism. It varies between species
and between individuals of the same species. Although tools have been developed to …

T2T-YAO: a telomere-to-telomere assembled diploid reference genome for Han Chinese

Y He, Y Chu, S Guo, J Hu, R Li, Y Zheng… - Genomics …, 2023 - academic.oup.com
Since its initial release in 2001, the human reference genome has undergone continuous
improvement in quality, and the recently released telomere-to-telomere (T2T) version—T2T …

Pangenome graphs improve the analysis of structural variants in rare genetic diseases

C Groza, C Schwendinger-Schreck, WA Cheung… - Nature …, 2024 - nature.com
Rare DNA alterations that cause heritable diseases are only partially resolvable by clinical
next-generation sequencing due to the difficulty of detecting structural variation (SV) in all …

Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation

F Yilmaz, C Karageorgiou, K Kim, P Pajic, K Scheer… - Science, 2024 - science.org
Previous studies suggested that the copy number of the human salivary amylase gene,
AMY1, correlates with starch-rich diets. However, evolutionary analyses are hampered by …