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Metal ion modeling using classical mechanics
Metal ions play significant roles in numerous fields including chemistry, geochemistry,
biochemistry, and materials science. With computational tools increasingly becoming …
biochemistry, and materials science. With computational tools increasingly becoming …
Practical aspects of free-energy calculations: a review
N Hansen, WF Van Gunsteren - Journal of chemical theory and …, 2014 - ACS Publications
Free-energy calculations in the framework of classical molecular dynamics simulations are
nowadays used in a wide range of research areas including solvation thermodynamics …
nowadays used in a wide range of research areas including solvation thermodynamics …
A force field of Li+, Na+, K+, Mg2+, Ca2+, Cl−, and SO42− in aqueous solution based on the TIP4P/2005 water model and scaled charges for the ions
In this work, a force field for several ions in water is proposed. In particular, we consider the
cations Li+, Na+, K+, Mg 2+, and Ca 2+ and the anions Cl− and SO 4 2−. These ions were …
cations Li+, Na+, K+, Mg 2+, and Ca 2+ and the anions Cl− and SO 4 2−. These ions were …
Constructing composite membranes from functionalized metal organic frameworks integrated MXene intended for ultrafast oil/water emulsion separation
Industrial development resulted to an increase in discharge of hazardous oily wastewater
with multi-component, which gravely threatens human health and the ecosystem. This is a …
with multi-component, which gravely threatens human health and the ecosystem. This is a …
The Madrid-2019 force field for electrolytes in water using TIP4P/2005 and scaled charges: Extension to the ions F−, Br−, I−, Rb+, and Cs+
In this work, an extension of the Madrid-2019 force field is presented. We have added the
cations Rb+ and Cs+ and the anions F−, Br−, and I−. These ions were the remaining alkaline …
cations Rb+ and Cs+ and the anions F−, Br−, and I−. These ions were the remaining alkaline …
Accounting for electronic polarization in non-polarizable force fields
The issues of electronic polarizability in molecular dynamics simulations are discussed. We
argue that the charges of ionized groups in proteins, and charges of ions in conventional …
argue that the charges of ionized groups in proteins, and charges of ions in conventional …
Scaled charges for ions: An improvement but not the final word for modeling electrolytes in water
In this work, we discuss the use of scaled charges when develo** force fields for NaCl in
water. We shall develop force fields for Na+ and Cl− using the following values for the …
water. We shall develop force fields for Na+ and Cl− using the following values for the …
A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization
Molecular simulations can elucidate atomistic-level mechanisms of key biological
processes, which are often hardly accessible to experiment. However, the results of the …
processes, which are often hardly accessible to experiment. However, the results of the …
Charge scaling manifesto: A way of reconciling the inherently macroscopic and microscopic natures of molecular simulations
BJ Kirby, P Jungwirth - The journal of physical chemistry letters, 2019 - ACS Publications
Electronic polarization effects play an important role in the interactions of charged species in
biologically relevant aqueous solutions, such as those involving salt ions, proteins, nucleic …
biologically relevant aqueous solutions, such as those involving salt ions, proteins, nucleic …
Computation of electrical conductivities of aqueous electrolyte solutions: Two surfaces, one property
In this work, we computed electrical conductivities under ambient conditions of aqueous
NaCl and KCl solutions by using the Einstein–Helfand equation. Common force fields …
NaCl and KCl solutions by using the Einstein–Helfand equation. Common force fields …