Toward resilient water-energy-food systems under shocks: Understanding the impact of migration, pandemics, and natural disasters
The historic pandemic faced by the international community today boldly demonstrates the
complexity and interconnectedness of the resource challenges we must better understand …
complexity and interconnectedness of the resource challenges we must better understand …
The impact of uncertainty on predictions of the CovidSim epidemiological code
Epidemiological modelling has assisted in identifying interventions that reduce the impact of
COVID-19. The UK government relied, in part, on the CovidSim model to guide its policy to …
COVID-19. The UK government relied, in part, on the CovidSim model to guide its policy to …
Mastering the scales: a survey on the benefits of multiscale computing software
In the last few decades, multiscale modelling has emerged as one of the dominant
modelling paradigms in many areas of science and engineering. Its rise to dominance is …
modelling paradigms in many areas of science and engineering. Its rise to dominance is …
Rapid, accurate, precise, and reliable relative free energy prediction using ensemble based thermodynamic integration
The accurate prediction of the binding affinities of ligands to proteins is a major goal in drug
discovery and personalized medicine. The time taken to make such predictions is of similar …
discovery and personalized medicine. The time taken to make such predictions is of similar …
Large scale study of ligand–protein relative binding free energy calculations: actionable predictions from statistically robust protocols
The accurate and reliable prediction of protein–ligand binding affinities can play a central
role in the drug discovery process as well as in personalized medicine. Of considerable …
role in the drug discovery process as well as in personalized medicine. Of considerable …
FACS: a geospatial agent-based simulator for analysing COVID-19 spread and public health measures on local regions
The recent Covid-19 outbreak has had a tremendous impact on the world, and many
countries are struggling to help incoming patients and at the same time, rapidly enact new …
countries are struggling to help incoming patients and at the same time, rapidly enact new …
Rapid and reliable binding affinity prediction of bromodomain inhibitors: a computational study
Binding free energies of bromodomain inhibitors are calculated with recently formulated
approaches, namely ESMACS (enhanced sampling of molecular dynamics with …
approaches, namely ESMACS (enhanced sampling of molecular dynamics with …
[HTML][HTML] Multiscale computing in the exascale era
We expect that multiscale simulations will be one of the main high performance computing
workloads in the exascale era. We propose multiscale computing patterns as a generic …
workloads in the exascale era. We propose multiscale computing patterns as a generic …
Long Time Scale Ensemble Methods in Molecular Dynamics: Ligand–Protein Interactions and Allostery in SARS-CoV-2 Targets
We subject a series of five protein–ligand systems which contain important SARS-CoV-2
targets, 3-chymotrypsin-like protease (3CLPro), papain-like protease, and adenosine ribose …
targets, 3-chymotrypsin-like protease (3CLPro), papain-like protease, and adenosine ribose …
Simulating refugee movements: Where would you go?
D Groen - Procedia Computer Science, 2016 - Elsevier
The challenge of understanding refugee movements is huge and affects countries
worldwide on a daily basis. Yet, in terms of simulation, the challenge appears to have been …
worldwide on a daily basis. Yet, in terms of simulation, the challenge appears to have been …