Hydrogen-bond donors in drug design
PW Kenny - Journal of Medicinal Chemistry, 2022 - ACS Publications
Hydrogen-bond donors are seen to cause more problems for drug designers than hydrogen-
bond acceptors. Most of the polarity in drug-like compounds comes from hydrogen-bond …
bond acceptors. Most of the polarity in drug-like compounds comes from hydrogen-bond …
GalaxyWater-CNN: Prediction of water positions on the protein structure by a 3D-convolutional neural network
S Park, C Seok - Journal of Chemical Information and Modeling, 2022 - ACS Publications
Proteins interact with numerous water molecules to perform their physiological functions in
biological organisms. Most water molecules act as solvent media; hence, their roles may be …
biological organisms. Most water molecules act as solvent media; hence, their roles may be …
Distribution and function of glycosaminoglycans and proteoglycans in the development, homeostasis and pathology of the ocular surface
S Puri, YM Coulson-Thomas, TF Gesteira… - Frontiers in cell and …, 2020 - frontiersin.org
The ocular surface, which forms the interface between the eye and the external environment,
includes the cornea, corneoscleral limbus, the conjunctiva and the accessory glands that …
includes the cornea, corneoscleral limbus, the conjunctiva and the accessory glands that …
Advances in the discovery of new chemotypes through ultra-large library docking
Introduction The size and complexity of virtual screening libraries in drug discovery have
skyrocketed in recent years, reaching up to multiple billions of accessible compounds …
skyrocketed in recent years, reaching up to multiple billions of accessible compounds …
Solvation free energy as a measure of hydrophobicity: application to serine protease binding interfaces
Solvation and hydrophobicity play a key role in a variety of biological mechanisms. In
substrate binding, but also in structure-based drug design, the thermodynamic properties of …
substrate binding, but also in structure-based drug design, the thermodynamic properties of …
Spatially resolved hydration thermodynamics in biomolecular systems
Water is essential for the structure, dynamics, energetics, and thus the function of
biomolecules. It is a formidable challenge to elicit, in microscopic detail, the role of the …
biomolecules. It is a formidable challenge to elicit, in microscopic detail, the role of the …
Hydration free energies and solvation structures with molecular density functional theory in the hypernetted chain approximation
The capability of molecular density functional theory in its lowest, second-order
approximation, equivalent to the hypernetted chain approximation in integral equations, to …
approximation, equivalent to the hypernetted chain approximation in integral equations, to …
Total free energy analysis of fully hydrated proteins
The total free energy of a hydrated biomolecule and its corresponding decomposition of
energy and entropy provides detailed information about regions of thermodynamic stability …
energy and entropy provides detailed information about regions of thermodynamic stability …
Simple parameter-free bridge functionals for molecular density functional theory. Application to hydrophobic solvation
Computer simulations have been fundamental in understanding the fine details of
hydrophobic solvation and hydrophobic interactions. Alternative approaches based on liquid …
hydrophobic solvation and hydrophobic interactions. Alternative approaches based on liquid …
Biomolecular Simulations with the Three-Dimensional Reference Interaction Site Model with the Kovalenko-Hirata Closure Molecular Solvation Theory
D Roy, A Kovalenko - International Journal of Molecular Sciences, 2021 - mdpi.com
The statistical mechanics-based 3-dimensional reference interaction site model with the
Kovalenko-Hirata closure (3D-RISM-KH) molecular solvation theory has proven to be an …
Kovalenko-Hirata closure (3D-RISM-KH) molecular solvation theory has proven to be an …