Fungal mitochondrial genomes and genetic polymorphisms

S Sandor, Y Zhang, J Xu - Applied microbiology and biotechnology, 2018 - Springer
Mitochondria are the powerhouses of eukaryotic cells, responsible for ATP generation and
playing a role in a diversity of cellular and organismal functions. Different from the majority of …

[HTML][HTML] Recent advances in understanding mitochondrial genome diversity

R Zardoya - F1000Research, 2020 - ncbi.nlm.nih.gov
Ever since its discovery, the double-stranded DNA contained in the mitochondria of
eukaryotes has fascinated researchers because of its bacterial endosymbiotic origin, crucial …

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

JJ **, WB Yu, JB Yang, Y Song, CW DePamphilis… - Genome biology, 2020 - Springer
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …

GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data

JJ Jian, WB Yu, JB Yang, Y Song, TS Yi, DZ Li - BioRxiv, 2018 - biorxiv.org
Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …

Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota

LJ Galindo, P López-García, G Torruella… - Nature …, 2021 - nature.com
Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living
flagellated stages (zoospores) remain poorly known and their phylogenetic position is often …

High and variable rates of repeat-mediated mitochondrial genome rearrangement in a genus of plants

LW Cole, W Guo, JP Mower… - Molecular Biology and …, 2018 - academic.oup.com
For 30 years, it has been clear that angiosperm mitochondrial genomes evolve rapidly in
sequence arrangement (ie, synteny), yet absolute rates of rearrangement have not been …

The coevolution of fungal mitochondrial introns and their homing endonucleases (GIY-YIG and LAGLIDADG)

AH Megarioti, VN Kouvelis - Genome biology and evolution, 2020 - academic.oup.com
Fungal mitochondrial (mt) genomes exhibit great diversity in size which is partially attributed
to their variable intergenic regions and most importantly to the inclusion of introns within …

The first eleven mitochondrial genomes from the ectomycorrhizal fungal genus (Boletus) reveal intron loss and gene rearrangement

Q Li, P Wu, L Li, H Feng, W Tu, Z Bao, C **ong… - International Journal of …, 2021 - Elsevier
In the present study, eleven novel complete mitogenomes of Boletus were assembled and
compared. The eleven complete mitogenomes were all composed of circular DNA …

The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism

CA Quandt, D Beaudet, D Corsaro, J Walochnik… - Elife, 2017 - elifesciences.org
Intracellular parasitism often results in gene loss, genome reduction, and dependence upon
the host for cellular functioning. Rozellomycota is a clade comprising many such parasites …

The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales

Q Li, W **ao, P Wu, T Zhang, P **ang, Q Wu, L Zou… - IMA fungus, 2023 - Springer
Apiotrichum is a diverse anamorphic basidiomycetous yeast genus, and its mitogenome
characterization has not been revealed. In this study, we assembled two Apiotrichum …