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Oxford Nanopore MinION sequencing and genome assembly
H Lu, F Giordano, Z Ning - Genomics, proteomics & …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
The present and future of de novo whole-genome assembly
As the advent of next-generation sequencing (NGS) technology, various de novo assembly
algorithms based on the de Bruijn graph have been developed to construct chromosome …
algorithms based on the de Bruijn graph have been developed to construct chromosome …
Versatile genome assembly evaluation with QUAST-LG
Motivation The emergence of high-throughput sequencing technologies revolutionized
genomics in early 2000s. The next revolution came with the era of long-read sequencing …
genomics in early 2000s. The next revolution came with the era of long-read sequencing …
TGS-GapCloser: a fast and accurate gap closer for large genomes with low coverage of error-prone long reads
Background Analyses that use genome assemblies are critically affected by the contiguity,
completeness, and accuracy of those assemblies. In recent years single-molecule …
completeness, and accuracy of those assemblies. In recent years single-molecule …
Complete nitrification by Nitrospira bacteria
Nitrification, the oxidation of ammonia via nitrite to nitrate, has always been considered to be
a two-step process catalysed by chemolithoautotrophic microorganisms oxidizing either …
a two-step process catalysed by chemolithoautotrophic microorganisms oxidizing either …
Oak genome reveals facets of long lifespan
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …
in our most common landscapes but they have also supplied human societies with …
Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching
INTRODUCTION Coral reefs worldwide are suffering losses at an alarming rate as a result of
anthropogenic climate change. Increased seawater temperatures, even only slightly above …
anthropogenic climate change. Increased seawater temperatures, even only slightly above …
The population genetics of structural variants in grapevine domestication
Structural variants (SVs) are a largely unexplored feature of plant genomes. Little is known
about the type and size of SVs, their distribution among individuals and, especially, their …
about the type and size of SVs, their distribution among individuals and, especially, their …
[HTML][HTML] Assessing the performance of the oxford nanopore technologies minion
Abstract The Oxford Nanopore Technologies (ONT) MinION is a new sequencing technology
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …
[PDF][PDF] Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification.
Although single‐nucleotide polymorphism (SNPs) were initially thought to make‐up the
majority of selectable variation (Morin, Luikart, & Wayne, 2004; Sachidanandam et al …
majority of selectable variation (Morin, Luikart, & Wayne, 2004; Sachidanandam et al …