Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, proteomics & …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …

The present and future of de novo whole-genome assembly

J Sohn, JW Nam - Briefings in bioinformatics, 2018 - academic.oup.com
As the advent of next-generation sequencing (NGS) technology, various de novo assembly
algorithms based on the de Bruijn graph have been developed to construct chromosome …

Versatile genome assembly evaluation with QUAST-LG

A Mikheenko, A Prjibelski, V Saveliev, D Antipov… - …, 2018 - academic.oup.com
Motivation The emergence of high-throughput sequencing technologies revolutionized
genomics in early 2000s. The next revolution came with the era of long-read sequencing …

TGS-GapCloser: a fast and accurate gap closer for large genomes with low coverage of error-prone long reads

M Xu, L Guo, S Gu, O Wang, R Zhang, BA Peters… - …, 2020 - academic.oup.com
Background Analyses that use genome assemblies are critically affected by the contiguity,
completeness, and accuracy of those assemblies. In recent years single-molecule …

Complete nitrification by Nitrospira bacteria

H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold… - Nature, 2015 - nature.com
Nitrification, the oxidation of ammonia via nitrite to nitrate, has always been considered to be
a two-step process catalysed by chemolithoautotrophic microorganisms oxidizing either …

Oak genome reveals facets of long lifespan

C Plomion, JM Aury, J Amselem, T Leroy, F Murat… - Nature plants, 2018 - nature.com
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …

Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching

ZL Fuller, VJL Mocellin, LA Morris, N Cantin… - Science, 2020 - science.org
INTRODUCTION Coral reefs worldwide are suffering losses at an alarming rate as a result of
anthropogenic climate change. Increased seawater temperatures, even only slightly above …

The population genetics of structural variants in grapevine domestication

Y Zhou, A Minio, M Massonnet, E Solares, Y Lv… - Nature plants, 2019 - nature.com
Structural variants (SVs) are a largely unexplored feature of plant genomes. Little is known
about the type and size of SVs, their distribution among individuals and, especially, their …

[HTML][HTML] Assessing the performance of the oxford nanopore technologies minion

T Laver, J Harrison, PA O'neill, K Moore… - Biomolecular detection …, 2015 - Elsevier
Abstract The Oxford Nanopore Technologies (ONT) MinION is a new sequencing technology
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …

[PDF][PDF] Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification.

M Wellenreuther, C Mérot, E Berdan… - Molecular ecology, 2019 - bio.ulaval.ca
Although single‐nucleotide polymorphism (SNPs) were initially thought to make‐up the
majority of selectable variation (Morin, Luikart, & Wayne, 2004; Sachidanandam et al …