Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …
evolutionary biology. The recent development of cost-effective methods for obtaining high …
A practical guide to environmental association analysis in landscape genomics
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …
factors that shape adaptive genetic variation and the gene variants that drive local …
DnaSP 6: DNA sequence polymorphism analysis of large data sets
J Rozas, A Ferrer-Mata… - Molecular biology …, 2017 - academic.oup.com
We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version
of the popular tool for performing exhaustive population genetic analyses on multiple …
of the popular tool for performing exhaustive population genetic analyses on multiple …
Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …
population genomic data at low cost, and has become an important component in ecological …
Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
AD Leaché, BL Banbury, J Felsenstein… - Systematic …, 2015 - academic.oup.com
Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
A decade of seascape genetics: contributions to basic and applied marine connectivity
Seascape genetics, a term coined in 2006, is a fast growing area of population genetics that
draws on ecology, oceanography and geography to address challenges in basic …
draws on ecology, oceanography and geography to address challenges in basic …
Applications of genoty** by sequencing in aquaculture breeding and genetics
Selective breeding is increasingly recognized as a key component of sustainable production
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …
Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genoty**‐by‐sequencing data from natural populations
Whole‐genome duplications have occurred in the recent ancestors of many plants, fish, and
amphibians, resulting in a pervasiveness of paralogous loci and the potential for both …
amphibians, resulting in a pervasiveness of paralogous loci and the potential for both …