The TetR family of transcriptional repressors

JL Ramos, M Martínez-Bueno… - Microbiology and …, 2005 - journals.asm.org
We have developed a general profile for the proteins of the TetR family of repressors. The
stretch that best defines the profile of this family is made up of 47 amino acid residues that …

The lipocalin protein family: structural and sequence overview

DR Flower, ACT North, CE Sansom - Biochimica et Biophysica Acta (BBA) …, 2000 - Elsevier
Lipocalins are remarkably diverse at the sequence level yet have highly conserved
structures. Most lipocalins share three characteristic conserved sequence motifs–the kernel …

Initial sequencing and analysis of the human genome

US DOE Joint Genome Institute: Hawkins Trevor 4 … - nature, 2001 - nature.com
The human genome holds an extraordinary trove of information about human development,
physiology, medicine and evolution. Here we report the results of an international …

InterProScan–an integration platform for the signature-recognition methods in InterPro

EM Zdobnov, R Apweiler - Bioinformatics, 2001 - academic.oup.com
InterProScan is a tool that scans given protein sequences against the protein signatures of
the InterPro member databases, currently–PROSITE, PRINTS, Pfam, ProDom and SMART …

RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family

J Kourelis, T Sakai, H Adachi, S Kamoun - PLoS Biology, 2021 - journals.plos.org
Reference datasets are critical in computational biology. They help define canonical
biological features and are essential for benchmarking studies. Here, we describe a …

The sponge microbiome project

L Moitinho-Silva, S Nielsen, A Amir, A Gonzalez… - …, 2017 - academic.oup.com
Rhododendron delavayi Franch. is globally famous as an ornamental plant. Its distribution in
southwest China covers several different habitats and environments. However, not much …

An overview of the structures of protein-DNA complexes

NM Luscombe, SE Austin, HM Berman, JM Thornton - Genome biology, 2000 - Springer
On the basis of a structural analysis of 240 protein-DNA complexes contained in the Protein
Data Bank (PDB), we have classified the DNA-binding proteins involved into eight different …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

R Apweiler, TK Attwood, A Bairoch… - Nucleic acids …, 2001 - academic.oup.com
Signature databases are vital tools for identifying distant relationships in novel sequences
and hence for inferring protein function. InterPro is an integrated documentation resource for …

Genome annotation: from sequence to biology

L Stein - Nature reviews genetics, 2001 - nature.com
The genome sequence of an organism is an information resource unlike any that biologists
have previously had access to. But the value of the genome is only as good as its …