Multi-faceted particle pumps drive carbon sequestration in the ocean

PW Boyd, H Claustre, M Levy, DA Siegel, T Weber - Nature, 2019 - nature.com
The ocean's ability to sequester carbon away from the atmosphere exerts an important
control on global climate. The biological pump drives carbon storage in the deep ocean and …

Microbial surface colonization and biofilm development in marine environments

H Dang, CR Lovell - Microbiology and molecular biology reviews, 2016 - Am Soc Microbiol
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms.
Surface colonization and subsequent biofilm formation and development provide numerous …

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

SG Acinas, P Sánchez, G Salazar… - Communications …, 2021 - nature.com
The deep sea, the largest ocean's compartment, drives planetary-scale biogeochemical
cycling. Yet, the functional exploration of its microbial communities lags far behind other …

Zooplankton fecal pellets, marine snow, phytodetritus and the ocean's biological pump

JT Turner - Progress in Oceanography, 2015 - Elsevier
The “biological pump” is the process by which photosynthetically-produced organic matter in
the ocean descends from the surface layer to depth by a combination of sinking particles …

Insights into the phylogeny and coding potential of microbial dark matter

C Rinke, P Schwientek, A Sczyrba, NN Ivanova… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …

Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups

MV Langwig, V De Anda, N Dombrowski… - The ISME …, 2022 - academic.oup.com
Deltaproteobacteria, now proposed to be the phyla Desulfobacterota, Myxococcota, and
SAR324, are ubiquitous in marine environments and play essential roles in global carbon …

The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally

GJ Dick - Nature Reviews Microbiology, 2019 - nature.com
The discovery of chemosynthetic ecosystems at deep-sea hydrothermal vents in 1977
changed our view of biology. Chemosynthetic bacteria and archaea form the foundation of …

VirSorter: mining viral signal from microbial genomic data

S Roux, F Enault, BL Hurwitz, MB Sullivan - PeerJ, 2015 - peerj.com
Viruses of microbes impact all ecosystems where microbes drive key energy and substrate
transformations including the oceans, humans and industrial fermenters. However, despite …

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

MG Pachiadaki, E Sintes, K Bergauer, JM Brown… - Science, 2017 - science.org
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …

Global niche of marine anaerobic metabolisms expanded by particle microenvironments

D Bianchi, TS Weber, R Kiko, C Deutsch - Nature Geoscience, 2018 - nature.com
In ocean waters, anaerobic microbial respiration should be confined to the anoxic waters
found in coastal regions and tropical oxygen minimum zones, where it is energetically …