Broadening the scope of biocatalysis in sustainable organic synthesis

RA Sheldon, D Brady - ChemSusChem, 2019 - Wiley Online Library
This Review is aimed at synthetic organic chemists who may be familiar with organometallic
catalysis but have no experience with biocatalysis, and seeks to provide an answer to the …

Self-assembling biomolecules for biosensor applications

J Kim, JH Kang, WH Kwon, I Lee, SJ Park… - Biomaterials …, 2023 - spj.science.org
Molecular self-assembly has received considerable attention in biomedical fields as a
simple and effective method for develo** biomolecular nanostructures. Self-assembled …

Generative design of de novo proteins based on secondary-structure constraints using an attention-based diffusion model

B Ni, DL Kaplan, MJ Buehler - Chem, 2023 - cell.com
We report two generative deep-learning models that predict amino acid sequences and 3D
protein structures on the basis of secondary-structure design objectives via either the overall …

ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a language diffusion model

B Ni, DL Kaplan, MJ Buehler - Science Advances, 2024 - science.org
Through evolution, nature has presented a set of remarkable protein materials, including
elastins, silks, keratins and collagens with superior mechanical performances that play …

Third generation antibody discovery methods: in silico rational design

P Sormanni, FA Aprile, M Vendruscolo - Chemical Society Reviews, 2018 - pubs.rsc.org
Owing to their outstanding performances in molecular recognition, antibodies are
extensively used in research and applications in molecular biology, biotechnology and …

Geared toward applications: A perspective on functional sequence-controlled polymers

C Yang, KB Wu, Y Deng, J Yuan, J Niu - ACS macro letters, 2021 - ACS Publications
Sequence-controlled polymers are an emerging class of synthetic polymers with a regulated
sequence of monomers. In the past decade, tremendous progress has been made in the …

Computational tools for modern vaccine development

Sunita, A Sajid, Y Singh, P Shukla - Human vaccines & …, 2020 - Taylor & Francis
Vaccines play an essential role in controlling the rates of fatality and morbidity. Vaccines not
only arrest the beginning of different diseases but also assign a gateway for its elimination …

Deep learning for mining protein data

Q Shi, W Chen, S Huang, Y Wang… - Briefings in …, 2021 - academic.oup.com
The recent emergence of deep learning to characterize complex patterns of protein big data
reveals its potential to address the classic challenges in the field of protein data mining …

Protein science meets artificial intelligence: a systematic review and a biochemical meta-analysis of an inter-field

J Villalobos-Alva, L Ochoa-Toledo… - … in Bioengineering and …, 2022 - frontiersin.org
Proteins are some of the most fascinating and challenging molecules in the universe, and
they pose a big challenge for artificial intelligence. The implementation of machine …

[HTML][HTML] Sonification based de novo protein design using artificial intelligence, structure prediction, and analysis using molecular modeling

CH Yu, MJ Buehler - APL bioengineering, 2020 - pubs.aip.org
We report the use of a deep learning model to design de novo proteins, based on the
interplay of elementary building blocks via hierarchical patterns. The deep neural network …