Mining genomes to illuminate the specialized chemistry of life

MH Medema, T de Rond, BS Moore - Nature Reviews Genetics, 2021 - nature.com
All organisms produce specialized organic molecules, ranging from small volatile chemicals
to large gene-encoded peptides, that have evolved to provide them with diverse cellular and …

Plant metabolic gene clusters in the multi-omics era

C Zhan, S Shen, C Yang, Z Liu, AR Fernie… - Trends in Plant …, 2022 - cell.com
Secondary metabolism in plants gives rise to a vast array of small-molecule natural
products. The discovery of operon-like gene clusters in plants has provided a new …

Integrative omics approaches for biosynthetic pathway discovery in plants

KS Singh, JJJ van der Hooft, SCM van Wees… - Natural Product …, 2022 - pubs.rsc.org
Covering: up to 2022 With the emergence of large amounts of omics data, computational
approaches for the identification of plant natural product biosynthetic pathways and their …

Plant biosynthetic gene clusters in the context of metabolic evolution

SJ Smit, BR Lichman - Natural Product Reports, 2022 - pubs.rsc.org
Covering: up to 2022 Plants produce a wide range of structurally and biosynthetically
diverse natural products to interact with their environment. These specialised metabolites …

Elucidation of tropane alkaloid biosynthesis in Erythroxylum coca using a microbial pathway discovery platform

BG Chavez, P Srinivasan, K Glockzin… - Proceedings of the …, 2022 - National Acad Sciences
Tropane alkaloids (TAs) are heterocyclic nitrogenous metabolites found across seven orders
of angiosperms, including Malpighiales (Erythroxylaceae) and Solanales (Solanaceae) …

Plant cytochrome P450 plasticity and evolution

CC Hansen, DR Nelson, BL Møller, D Werck-Reichhart - Molecular Plant, 2021 - cell.com
The superfamily of cytochrome P450 (CYP) enzymes plays key roles in plant evolution and
metabolic diversification. This review provides a status on the CYP landscape within green …

Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize

C Förster, V Handrick, Y Ding, Y Nakamura… - Plant …, 2022 - academic.oup.com
Fungal infection of grasses, including rice (Oryza sativa), sorghum (Sorghum bicolor), and
barley (Hordeum vulgare), induces the formation and accumulation of flavonoid …

The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids

L Thoenen, M Kreuzer, C Pestalozzi, M Florean… - Nature …, 2024 - nature.com
Root exudates contain specialised metabolites that shape the plant's root microbiome. How
host-specific microbes cope with these bioactive compounds, and how this ability affects root …

Hordedane diterpenoid phytoalexins restrict Fusarium graminearum infection but enhance Bipolaris sorokiniana colonization of barley roots

Y Liu, D Esposto, LK Mahdi, A Porzel, P Stark… - Molecular Plant, 2024 - cell.com
Plant immunity is a multilayered process that includes recognition of patterns or effectors
from pathogens to elicit defense responses. These include the induction of a cocktail of …

Promiscuity, a driver of plant cytochrome P450 evolution?

D Werck-Reichhart - Biomolecules, 2023 - mdpi.com
Plant cytochrome P450 monooxygenases were long considered to be highly substrate-
specific, regioselective and stereoselective enzymes, in this respect differing from their …