Carbon-oxygen hydrogen bonding in biological structure and function
S Horowitz, RC Trievel - Journal of Biological Chemistry, 2012 - ASBMB
Carbon-oxygen (CH··· O) hydrogen bonding represents an unusual category of molecular
interactions first documented in biological structures over 4 decades ago. Although CH··· O …
interactions first documented in biological structures over 4 decades ago. Although CH··· O …
The role of water in protein-DNA recognition
▪ Abstract Is it by design or by default that water molecules are observed at the interfaces of
some protein-DNA complexes? Both experimental and theoretical studies on the …
some protein-DNA complexes? Both experimental and theoretical studies on the …
Biotin's lessons in drug design
DB McConnell - Journal of medicinal chemistry, 2021 - ACS Publications
At the heart of drug design is the discovery of molecules that bind with high affinity to their
drug targets. Biotin forms the strongest known noncovalent ligand–protein interactions with …
drug targets. Biotin forms the strongest known noncovalent ligand–protein interactions with …
[HTML][HTML] Geometry of nonbonded interactions involving planar groups in proteins
Although hydrophobic interaction is the main contributing factor to the stability of the protein
fold, the specificity of the folding process depends on many directional interactions. An …
fold, the specificity of the folding process depends on many directional interactions. An …
Progress toward understanding the nature and function of CH... O interactions
RK Castellano - Current Organic Chemistry, 2004 - ingentaconnect.com
Recent studies confirm that CH... O hydrogen bonds have many, if not all, of the
spectroscopic and physical earmarks of “traditional” H-bonds. Only more recently have we …
spectroscopic and physical earmarks of “traditional” H-bonds. Only more recently have we …
The significant role of the intermolecular CH⋯ O/N hydrogen bonds in governing the biologically important pairs of the DNA and RNA modified bases: a …
This paper is a logical continuation of the theoretical survey of the CH⋯ O/N specific contacts
in the nucleobase pairs using a wide arsenal of the modern methods, which was initiated in …
in the nucleobase pairs using a wide arsenal of the modern methods, which was initiated in …
Nucleic acids: theory and computer simulation, Y2K
DL Beveridge, KJ McConnell - Current opinion in structural biology, 2000 - Elsevier
Molecular dynamics simulations on DNA and RNA that include solvent are now being
performed under realistic environmental conditions of water activity and salt. Improvements …
performed under realistic environmental conditions of water activity and salt. Improvements …
Probing the hydrogen-bonding environment of individual bases in DNA duplexes with isotope-edited infrared spectroscopy
RJ Fick, AY Liu, F Nussbaumer, C Kreutz… - The Journal of …, 2021 - ACS Publications
Measuring the strength of the hydrogen bonds between DNA base pairs is of vital
importance for understanding how our genetic code is physically accessed and recognized …
importance for understanding how our genetic code is physically accessed and recognized …
The occurrence of C H… O hydrogen bonds in α‐helices and helix termini in globular proteins
K Manikandan, S Ramakumar - Proteins: Structure, Function …, 2004 - Wiley Online Library
A comprehensive database analysis of C H… O hydrogen bonds in 3124 α‐helices and
their corresponding helix termini has been carried out from a nonredundant data set of high …
their corresponding helix termini has been carried out from a nonredundant data set of high …
Conformational Preferences of Modified Nucleoside N(4)-Acetylcytidine, ac4C Occur at “Wobble” 34th Position in the Anticodon Loop of tRNA
Conformational preferences of modified nucleoside, N (4)-acetylcytidine, ac 4 C have been
investigated using quantum chemical semi-empirical RM1 method. Automated geometry …
investigated using quantum chemical semi-empirical RM1 method. Automated geometry …