Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Sticky problems: extraction of nucleic acids from molluscs
CM Adema - … Transactions of the Royal Society B, 2021 - royalsocietypublishing.org
Traditional molecular methods and omics-techniques across molluscan taxonomy
increasingly inform biology of Mollusca. Recovery of DNA and RNA for such studies is …
increasingly inform biology of Mollusca. Recovery of DNA and RNA for such studies is …
Convergent evolution of plant prickles by repeated gene co-option over deep time
An enduring question in evolutionary biology concerns the degree to which episodes of
convergent trait evolution depend on the same genetic programs, particularly over long …
convergent trait evolution depend on the same genetic programs, particularly over long …
A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding
WMJ van Rengs, MHW Schmidt, S Effgen… - The Plant …, 2022 - Wiley Online Library
The assembly and scaffolding of plant crop genomes facilitate the characterization of
genetically diverse cultivated and wild germplasm. The cultivated tomato (Solanum …
genetically diverse cultivated and wild germplasm. The cultivated tomato (Solanum …
Newly developed MAGIC population allows identification of strong associations and candidate genes for anthocyanin pigmentation in eggplant
Multi-parent advanced generation inter-cross (MAGIC) populations facilitate the genetic
dissection of complex quantitative traits in plants and are valuable breeding materials. We …
dissection of complex quantitative traits in plants and are valuable breeding materials. We …
[HTML][HTML] A novel and rapid method for Agrobacterium-mediated production of stably transformed Cannabis sativa L. plants
The development of genetically transformed plants is an elusive landmark in Cannabis
sativa L. breeding. Despite its economic interest, at present, protocols for producing …
sativa L. breeding. Despite its economic interest, at present, protocols for producing …
Mutations in the SmAPRR2 transcription factor suppressing chlorophyll pigmentation in the eggplant fruit peel are key drivers of a diversified colour palette
A Arrones, G Mangino, D Alonso, M Plazas… - Frontiers in Plant …, 2022 - frontiersin.org
Understanding the mechanisms by which chlorophylls are synthesized in the eggplant
(Solanum melongena) fruit peel is of great relevance for eggplant breeding. A multi-parent …
(Solanum melongena) fruit peel is of great relevance for eggplant breeding. A multi-parent …
Whole-genome sequence and methylome profiling of the almond [Prunus dulcis (Mill.) DA Webb] cultivar 'Nonpareil'
Abstract Almond [Prunus dulcis (Mill.) DA Webb] is an economically important, specialty nut
crop grown almost exclusively in the United States. Breeding and improvement efforts …
crop grown almost exclusively in the United States. Breeding and improvement efforts …
Going broad and deep: sequencing‐driven insights into plant physiology, evolution, and crop domestication
Deep sequencing is a term that has become embedded in the plant genomic literature in
recent years and with good reason. A torrent of (largely) high‐quality genomic and …
recent years and with good reason. A torrent of (largely) high‐quality genomic and …
Analysis of> 3400 worldwide eggplant accessions reveals two independent domestication events and multiple migration‐diversification routes
Eggplant (Solanum melongena) is an important Solanaceous crop, widely cultivated and
consumed in Asia, the Mediterranean basin, and Southeast Europe. Its domestication …
consumed in Asia, the Mediterranean basin, and Southeast Europe. Its domestication …