Polygenic adaptation: a unifying framework to understand positive selection

N Barghi, J Hermisson, C Schlötterer - Nature Reviews Genetics, 2020 - nature.com
Most adaption processes have a polygenic genetic basis, but even with the recent explosive
growth of genomic data we are still lacking a unified framework describing the dynamics of …

The evolutionary genomics of species' responses to climate change

JA Aguirre-Liguori, S Ramírez-Barahona… - Nature Ecology & …, 2021 - nature.com
Climate change is a threat to biodiversity. One way that this threat manifests is through
pronounced shifts in the geographical range of species over time. To predict these shifts …

Evolutionary genomics can improve prediction of species' responses to climate change

AM Waldvogel, B Feldmeyer, G Rolshausen… - Evolution …, 2020 - academic.oup.com
Global climate change (GCC) increasingly threatens biodiversity through the loss of species,
and the transformation of entire ecosystems. Many species are challenged by the pace of …

Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

Comparing methods for detecting multilocus adaptation with multivariate genotype–environment associations

BR Forester, JR Lasky, HH Wagner… - Molecular …, 2018 - Wiley Online Library
Identifying adaptive loci can provide insight into the mechanisms underlying local
adaptation. Genotype–environment association (GEA) methods, which identify these loci …

The paradox of adaptive trait clines with nonclinal patterns in the underlying genes

KE Lotterhos - Proceedings of the National Academy of Sciences, 2023 - pnas.org
Multivariate climate change presents an urgent need to understand how species adapt to
complex environments. Population genetic theory predicts that loci under selection will form …

Neutral and adaptive genetic diversity in plants: An overview

MY Chung, J Merilä, J Li, K Mao… - Frontiers in Ecology …, 2023 - frontiersin.org
Genetic diversity is a prerequisite for evolutionary change in all kinds of organisms. It is
generally acknowledged that populations lacking genetic variation are unable to evolve in …

LEA: An R package for landscape and ecological association studies

E Frichot, O François - Methods in ecology and evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

Re-thinking the environment in landscape genomics

B Dauphin, C Rellstab, RO Wüest, DN Karger… - Trends in Ecology & …, 2023 - cell.com
Detecting the extrinsic selective pressures sha** genomic variation is critical for a better
understanding of adaptation and for forecasting evolutionary responses of natural …