A survey on deep learning in medical image registration: New technologies, uncertainty, evaluation metrics, and beyond

J Chen, Y Liu, S Wei, Z Bian, S Subramanian… - Medical Image …, 2024 - Elsevier
Deep learning technologies have dramatically reshaped the field of medical image
registration over the past decade. The initial developments, such as regression-based and U …

Universeg: Universal medical image segmentation

VI Butoi, JJG Ortiz, T Ma, MR Sabuncu… - Proceedings of the …, 2023 - openaccess.thecvf.com
While deep learning models have become the predominant method for medical image
segmentation, they are typically not capable of generalizing to unseen segmentation tasks …

[HTML][HTML] SynthStrip: skull-strip** for any brain image

A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann - NeuroImage, 2022 - Elsevier
The removal of non-brain signal from magnetic resonance imaging (MRI) data, known as
skull-strip**, is an integral component of many neuroimage analysis streams. Despite their …

Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning

A Hering, L Hansen, TCW Mok… - … on Medical Imaging, 2022 - ieeexplore.ieee.org
Image registration is a fundamental medical image analysis task, and a wide variety of
approaches have been proposed. However, only a few studies have comprehensively …

A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI

JE Iglesias - Scientific Reports, 2023 - nature.com
Volumetric registration of brain MRI is routinely used in human neuroimaging, eg, to align
different MRI modalities, to measure change in longitudinal analysis, to map an individual to …

Deep Learning in Medical Image Registration: Magic or Mirage?

R Jena, D Sethi, P Chaudhari… - Advances in Neural …, 2025 - proceedings.neurips.cc
Classical optimization and learning-based methods are the two reigning paradigms in
deformable image registration. While optimization-based methods boast generalizability …

A robust and interpretable deep learning framework for multi-modal registration via keypoints

AQ Wang, MY Evan, AV Dalca, MR Sabuncu - Medical image analysis, 2023 - Elsevier
We present KeyMorph, a deep learning-based image registration framework that relies on
automatically detecting corresponding keypoints. State-of-the-art deep learning methods for …

R2Net: Efficient and flexible diffeomorphic image registration using Lipschitz continuous residual networks

A Joshi, Y Hong - Medical Image Analysis, 2023 - Elsevier
Classical diffeomorphic image registration methods, while being accurate, face the
challenges of high computational costs. Deep learning based approaches provide a fast …

GradICON: Approximate diffeomorphisms via gradient inverse consistency

L Tian, H Greer, FX Vialard, R Kwitt… - Proceedings of the …, 2023 - openaccess.thecvf.com
We present an approach to learning regular spatial transformations between image pairs in
the context of medical image registration. Contrary to optimization-based registration …

Tyche: Stochastic in-context learning for medical image segmentation

M Rakic, HE Wong, JJG Ortiz… - Proceedings of the …, 2024 - openaccess.thecvf.com
Existing learning-based solutions to medical image segmentation have two important
shortcomings. First for most new segmentation tasks a new model has to be trained or fine …