A practical guide to bioimaging research data management in core facilities

C Schmidt, T Boissonnet, J Dohle… - Journal of …, 2024 - Wiley Online Library
Bioimage data are generated in diverse research fields throughout the life and biomedical
sciences. Its potential for advancing scientific progress via modern, data‐driven discovery …

Community-developed checklists for publishing images and image analyses

C Schmied, MS Nelson, S Avilov, GJ Bakker… - Nature …, 2024 - nature.com
Images document scientific discoveries and are prevalent in modern biomedical research.
Microscopy imaging in particular is currently undergoing rapid technological advancements …

Creating and troubleshooting microscopy analysis workflows: common challenges and common solutions

BA Cimini - Journal of microscopy, 2024 - Wiley Online Library
As microscopy diversifies and becomes ever more complex, the problem of quantification of
microscopy images has emerged as a major roadblock for many researchers. All …

The crucial role of bioimage analysts in scientific research and publication

BA Cimini, P Bankhead, R d'Antuono… - Journal of cell …, 2024 - journals.biologists.com
Bioimage analysis (BIA), a crucial discipline in biological research, overcomes the
limitations of subjective analysis in microscopy through the creation and application of …

A community-driven approach to enhancing the quality and interpretability of microscopy images

HK Jambor - Journal of Cell Science, 2023 - journals.biologists.com
Scientific publications in the life sciences regularly include image data to display and
communicate revelations about cellular structure and function. In 2016, a set of guiding …

Bridging imaging-based in vitro methods from biomedical research to regulatory toxicology

M Piergiovanni, M Mennecozzi, E Barale-Thomas… - Archives of …, 2025 - Springer
Imaging technologies are being increasingly used in biomedical research and experimental
toxicology to gather morphological and functional information from cellular models. There is …

[HTML][HTML] Microscopy methods for the in vivo study of nanoscale nuclear organization

NR Lokesh, ME Pownall - Biochemical Society Transactions, 2025 - portlandpress.com
Eukaryotic genomes are highly compacted within the nucleus and organized into complex
3D structures across various genomic and physical scales. Organization within the nucleus …

An optimized P. berghei liver stage–HepG2 infection model for simultaneous quantitative bioimaging of host and parasite nascent proteomes

JL McLellan, A Garcia-Vilanova, KK Hanson - Bio-protocol, 2024 - bio-protocol.org
Background Plasmodium parasites, the causative agents of malaria, have a complex
lifecycle spanning both mosquito and human hosts. The first obligate step for parasite …

Simple quantitation and spatial characterization of label free cellular images

VCJ de Boer, X Zhang - Heliyon, 2024 - cell.com
Label-free imaging is routinely used during cell culture because of its minimal interference
with intracellular biology and capability of observing cells over time. However, label-free …

Imaging actin organisation and dynamics in 3D

TA Phillips, S Marcotti, S Cox… - Journal of Cell …, 2024 - journals.biologists.com
The actin cytoskeleton plays a critical role in cell architecture and the control of fundamental
processes including cell division, migration and survival. The dynamics and organisation of …