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QMEANDisCo—distance constraints applied on model quality estimation
G Studer, C Rempfer, AM Waterhouse… - …, 2020 - academic.oup.com
Motivation Methods that estimate the quality of a 3D protein structure model in absence of an
experimental reference structure are crucial to determine a model's utility and potential …
experimental reference structure are crucial to determine a model's utility and potential …
Immunoinformatics: In Silico Approaches and Computational Design of a Multi-epitope, Immunogenic Protein
Immunoinformatics is a new critical field with several tools and databases that conduct the
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …
Methods for the refinement of protein structure 3D models
The refinement of predicted 3D protein models is crucial in bringing them closer towards
experimental accuracy for further computational studies. Refinement approaches can be …
experimental accuracy for further computational studies. Refinement approaches can be …
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers
LJ McGuffin, NS Edmunds, AG Genc… - Nucleic acids …, 2023 - academic.oup.com
The IntFOLD server based at the University of Reading has been a leading method over the
past decade in providing free access to accurate prediction of protein structures and …
past decade in providing free access to accurate prediction of protein structures and …
IntFOLD: an integrated web resource for high performance protein structure and function prediction
The IntFOLD server provides a unified resource for the automated prediction of: protein
tertiary structures with built-in estimates of model accuracy (EMA), protein structural domain …
tertiary structures with built-in estimates of model accuracy (EMA), protein structural domain …
ModFOLD8: accurate global and local quality estimates for 3D protein models
LJ McGuffin, FMF Aldowsari, SMA Alharbi… - Nucleic acids …, 2021 - academic.oup.com
Methods for estimating the quality of 3D models of proteins are vital tools for driving the
acceptance and utility of predicted tertiary structures by the wider bioscience community …
acceptance and utility of predicted tertiary structures by the wider bioscience community …
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12
J Haas, A Barbato, D Behringer… - Proteins: Structure …, 2018 - Wiley Online Library
Every second year, the community experiment “Critical Assessment of Techniques for
Structure Prediction”(CASP) is conducting an independent blind assessment of structure …
Structure Prediction”(CASP) is conducting an independent blind assessment of structure …
Klebsiella pneumoniae type VI secretion system-mediated microbial competition is PhoPQ controlled and reactive oxygen species dependent
D Storey, A McNally, M Åstrand… - PLoS …, 2020 - journals.plos.org
Klebsiella pneumoniae is recognized as an urgent threat to human health due to the
increasing isolation of multidrug resistant strains. Hypervirulent strains are a major concern …
increasing isolation of multidrug resistant strains. Hypervirulent strains are a major concern …
Building structural models of a whole mycoplasma cell
Building structural models of entire cells has been a long-standing cross-discipline
challenge for the research community, as it requires an unprecedented level of integration …
challenge for the research community, as it requires an unprecedented level of integration …
Estimation of model accuracy in CASP13
Methods to reliably estimate the accuracy of 3D models of proteins are both a fundamental
part of most protein folding pipelines and important for reliable identification of the best …
part of most protein folding pipelines and important for reliable identification of the best …