Molecular dynamics and Monte Carlo simulations of lipid bilayers
RW Pastor - Current Opinion in Structural Biology, 1994 - Elsevier
Molecular dynamics simulations of lipid bilayer/water systems have been reported by a
number of groups, and are generally in good agreement with experimental results and with …
number of groups, and are generally in good agreement with experimental results and with …
Modeling kinetics of subcellular disposition of chemicals
S Balaz - Chemical Reviews, 2009 - ACS Publications
The effects of low-molecular-weight (< 1000 g/mol) chemicals on biosystems ranging from
membranes to organisms are of interest in medicinal chemistry, chemical biology …
membranes to organisms are of interest in medicinal chemistry, chemical biology …
Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes
Cecropins are positively charged antibacterial peptides that act by permeating the
membrane of susceptible bacteria. To gain insight into the mechanism of membrane …
membrane of susceptible bacteria. To gain insight into the mechanism of membrane …
Structure and properties of confined liquids: a molecular model of the clay-water interface
A Delville - The Journal of Physical Chemistry, 1993 - ACS Publications
Grand canonical Monte Carlo simulations are used tomodel the layering of water molecules
confined between two mica particles. In the range of interparticle separations studied, the …
confined between two mica particles. In the range of interparticle separations studied, the …
Insertion of peptide chains into lipid membranes: an off‐lattice Monte Carlo dynamics model
A combination of dynamic Monte Carlo simulation techniques with a hydropathy scale
method for the prediction of the location of transmembrane fragments in membrane proteins …
method for the prediction of the location of transmembrane fragments in membrane proteins …
Viewpoint 9—Molecular structure of aqueous interfaces
A Pohorille, MA Wilson - Journal of Molecular Structure: Theochem, 1993 - Elsevier
In this review we summarize recent progress in our understanding of the structure of
aqueous interfaces emerging from molecular level computer simulations. It is emphasized …
aqueous interfaces emerging from molecular level computer simulations. It is emphasized …
On the relationship between CC and CD order parameters and its use for studying the conformation of lipid acyl chains in biomembranes
We have used the order tensor method to establish relationships between carbon-carbon
and carbon-deuterium order parameters (SCC and SCD, respectively) in saturated and …
and carbon-deuterium order parameters (SCC and SCD, respectively) in saturated and …
Molecular dynamics simulations of phospholipid bilayers
P Huang, JJ Perez, GH Loew - Journal of Biomolecular Structure …, 1994 - Taylor & Francis
Molecular dynamics (MD) simulations at 37° C have been performed on three phospholipid
bilayer systems composed of the lipids DLPE, DOPE, and DOPC. The model used included …
bilayer systems composed of the lipids DLPE, DOPE, and DOPC. The model used included …
Peptide–bilayer interactions: simulations of dermaseptin B, an antimicrobial peptide
P La Rocca, Y Shai, MSP Sansom - Biophysical chemistry, 1999 - Elsevier
Dermaseptins, a family of antimicrobial peptides, are believed to act by forming amphipathic
α-helices which associate with the cell membrane, leading to its permeabilisation and …
α-helices which associate with the cell membrane, leading to its permeabilisation and …
Molecular dynamics studies of simple membrane—Water interfaces: Structure and functions in the beginnings of cellular life
A Pohorille, MA Wilson - Origins of Life and Evolution of the Biosphere, 1995 - Springer
Molecular dynamics computer simulations of the structure and functions of a simple
membrane are performed in order to examine whether membranes provide an environment …
membrane are performed in order to examine whether membranes provide an environment …