Molecular dynamics and Monte Carlo simulations of lipid bilayers

RW Pastor - Current Opinion in Structural Biology, 1994 - Elsevier
Molecular dynamics simulations of lipid bilayer/water systems have been reported by a
number of groups, and are generally in good agreement with experimental results and with …

Modeling kinetics of subcellular disposition of chemicals

S Balaz - Chemical Reviews, 2009 - ACS Publications
The effects of low-molecular-weight (< 1000 g/mol) chemicals on biosystems ranging from
membranes to organisms are of interest in medicinal chemistry, chemical biology …

Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes

E Gazit, IR Miller, PC Biggin, MSP Sansom… - Journal of molecular …, 1996 - Elsevier
Cecropins are positively charged antibacterial peptides that act by permeating the
membrane of susceptible bacteria. To gain insight into the mechanism of membrane …

Structure and properties of confined liquids: a molecular model of the clay-water interface

A Delville - The Journal of Physical Chemistry, 1993 - ACS Publications
Grand canonical Monte Carlo simulations are used tomodel the layering of water molecules
confined between two mica particles. In the range of interparticle separations studied, the …

Insertion of peptide chains into lipid membranes: an off‐lattice Monte Carlo dynamics model

M Milik, J Skolnick - Proteins: Structure, Function, and …, 1993 - Wiley Online Library
A combination of dynamic Monte Carlo simulation techniques with a hydropathy scale
method for the prediction of the location of transmembrane fragments in membrane proteins …

Viewpoint 9—Molecular structure of aqueous interfaces

A Pohorille, MA Wilson - Journal of Molecular Structure: Theochem, 1993 - Elsevier
In this review we summarize recent progress in our understanding of the structure of
aqueous interfaces emerging from molecular level computer simulations. It is emphasized …

On the relationship between CC and CD order parameters and its use for studying the conformation of lipid acyl chains in biomembranes

JP Douliez, A Ferrarini, EJ Dufourc - The Journal of chemical physics, 1998 - pubs.aip.org
We have used the order tensor method to establish relationships between carbon-carbon
and carbon-deuterium order parameters (SCC and SCD, respectively) in saturated and …

Molecular dynamics simulations of phospholipid bilayers

P Huang, JJ Perez, GH Loew - Journal of Biomolecular Structure …, 1994 - Taylor & Francis
Molecular dynamics (MD) simulations at 37° C have been performed on three phospholipid
bilayer systems composed of the lipids DLPE, DOPE, and DOPC. The model used included …

Peptide–bilayer interactions: simulations of dermaseptin B, an antimicrobial peptide

P La Rocca, Y Shai, MSP Sansom - Biophysical chemistry, 1999 - Elsevier
Dermaseptins, a family of antimicrobial peptides, are believed to act by forming amphipathic
α-helices which associate with the cell membrane, leading to its permeabilisation and …

Molecular dynamics studies of simple membrane—Water interfaces: Structure and functions in the beginnings of cellular life

A Pohorille, MA Wilson - Origins of Life and Evolution of the Biosphere, 1995 - Springer
Molecular dynamics computer simulations of the structure and functions of a simple
membrane are performed in order to examine whether membranes provide an environment …