Computational methods for gene regulatory networks reconstruction and analysis: a review

FM Delgado, F Gómez-Vela - Artificial intelligence in medicine, 2019 - Elsevier
In the recent years, the vast amount of genetic information generated by new-generation
approaches, have led to the need of new data handling methods. The integrative analysis of …

Application of precision medicine in neurodegenerative diseases

C Strafella, V Caputo, MR Galota, S Zampatti… - Frontiers in …, 2018 - frontiersin.org
One of the main challenges for healthcare systems is the increasing prevalence of
neurodegenerative pathologies together with the rapidly aging populations. The enormous …

iLSGRN: inference of large-scale gene regulatory networks based on multi-model fusion

Y Wu, B Qian, A Wang, H Dong, E Zhu, B Ma - Bioinformatics, 2023 - academic.oup.com
Abstract Motivation Gene regulatory networks (GRNs) are a way of describing the interaction
between genes, which contribute to revealing the different biological mechanisms in the cell …

[HTML][HTML] Multiomics reveals ectopic ATP synthase blockade induces cancer cell death via a lncRNA-mediated phospho-signaling network

YW Chang, CL Hsu, CW Tang, XJ Chen… - Molecular & Cellular …, 2020 - Elsevier
The EGFR tyrosine kinase inhibitor gefitinib is commonly used for lung cancer patients.
However, some patients eventually become resistant to gefitinib and develop progressive …

Methods in epigenetics-based systems biology and their applications

S Jung, M Ali, A Del Sol - Epigenetics Methods, 2020 - Elsevier
The large-scale advancement of high-throughput sequencing technologies has enabled the
interrogation of different regulatory layers. Especially the development of computational …

Stability in GRN inference

G Jurman, M Filosi, R Visintainer, S Riccadonna… - … Networks: Methods and …, 2019 - Springer
Reconstructing a gene regulatory network from one or more sets of omics measurements
has been a major task of computational biology in the last 20 years. Despite an …

Estimating Gene Regulatory Activity using Mathematical Optimization

S Trescher - 2020 - edoc.hu-berlin.de
Gene regulation is one of the most important cellular processes and closely interlinked
pathogenesis. The elucidation of regulatory mechanisms can be approached by many …

Intelligent Frameworks for Diagnosis in the Precision Medicine Era

A Brunetti - 2020 - tesidottorato.depositolegale.it
This Ph. D. thesis aims to describe all the research works conducted for the design,
development and evaluation of intelligent frameworks for supporting the diagnosis in several …