Soil viral diversity, ecology and climate change

JK Jansson, R Wu - Nature Reviews Microbiology, 2023 - nature.com
Soil viruses are highly abundant and have important roles in the regulation of host dynamics
and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems …

Interactions between bacterial and phage communities in natural environments

A Chevallereau, BJ Pons, S van Houte… - Nature Reviews …, 2022 - nature.com
We commonly acknowledge that bacterial viruses (phages) shape the composition and
evolution of bacterial communities in nature and therefore have important roles in ecosystem …

Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

J Johansen, K Atarashi, Y Arai, N Hirose… - Nature …, 2023 - nature.com
Distinct gut microbiome ecology may be implicated in the prevention of aging-related
diseases as it influences systemic immune function and resistance to infections. Yet, the viral …

Interrogating the viral dark matter of the rumen ecosystem with a global virome database

M Yan, AA Pratama, S Somasundaram, Z Li… - Nature …, 2023 - nature.com
The diverse rumen virome can modulate the rumen microbiome, but it remains largely
unexplored. Here, we mine 975 published rumen metagenomes for viral sequences, create …

Adaptive strategies and ecological roles of phages in habitats under physicochemical stress

D Huang, R **a, C Chen, J Liao, L Chen, D Wang… - Trends in …, 2024 - cell.com
Bacteriophages (phages) play a vital role in ecosystem functions by influencing the
composition, genetic exchange, metabolism, and environmental adaptation of microbial …

Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting

H Liao, C Liu, C Ai, T Gao, QE Yang, Z Yu… - The ISME …, 2023 - academic.oup.com
While decomposition of organic matter by bacteria plays a major role in nutrient cycling in
terrestrial ecosystems, the significance of viruses remains poorly understood. Here we …

Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages

JL Liang, S Feng, J Lu, X Wang, F Li, Y Guo… - Nature …, 2024 - nature.com
Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While
a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are …

Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments

M Yu, M Zhang, R Zeng, R Cheng, R Zhang… - Nature …, 2024 - nature.com
Seamounts are globally distributed across the oceans and form one of the major oceanic
biomes. Here, we utilized combined analyses of bulk metagenome and virome to study viral …

[HTML][HTML] Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut

TL Brown, OJ Charity, EM Adriaenssens - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phages are abundant within ecosystems, but their role is often understated.•
Ecological success models can help explain observed phage–bacteria …

COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes

LX Chen, JF Banfield - Nature Microbiology, 2024 - nature.com
Viruses are often studied using metagenome-assembled sequences, but genome
incompleteness hampers comprehensive and accurate analyses. Contig Overlap Based Re …