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Graphics processing units in bioinformatics, computational biology and systems biology
Abstract Several studies in Bioinformatics, Computational Biology and Systems Biology rely
on the definition of physico-chemical or mathematical models of biological systems at …
on the definition of physico-chemical or mathematical models of biological systems at …
A perspective on the investigation of spectroscopy and kinetics of complex molecular systems with semiclassical approaches
In this Perspective we show that semiclassical methods provide a rigorous hierarchical way
to study the vibrational spectroscopy and kinetics of complex molecular systems. The time …
to study the vibrational spectroscopy and kinetics of complex molecular systems. The time …
Semiclassical “Divide-and-Conquer” method for spectroscopic calculations of high dimensional molecular systems
A new semiclassical “divide-and-conquer” method is presented with the aim of
demonstrating that quantum dynamics simulations of high dimensional molecular systems …
demonstrating that quantum dynamics simulations of high dimensional molecular systems …
On-the-fly ab initio semiclassical calculation of glycine vibrational spectrum
We present an on-the-fly ab initio semiclassical study of vibrational energy levels of glycine,
calculated by Fourier transform of the wavepacket correlation function. It is based on a …
calculated by Fourier transform of the wavepacket correlation function. It is based on a …
Integrated PK-PD and agent-based modeling in oncology
Mathematical modeling has become a valuable tool that strives to complement conventional
biomedical research modalities in order to predict experimental outcome, generate new …
biomedical research modalities in order to predict experimental outcome, generate new …
“Divide and conquer” semiclassical molecular dynamics: A practical method for spectroscopic calculations of high dimensional molecular systems
We extensively describe our recently established “divide-and-conquer” semiclassical
method [M. Ceotto, G. Di Liberto, and R. Conte, Phys. Rev. Lett. 119, 010401 (2017)] and …
method [M. Ceotto, G. Di Liberto, and R. Conte, Phys. Rev. Lett. 119, 010401 (2017)] and …
Machine learning for vibrational spectroscopy via divide-and-conquer semiclassical initial value representation molecular dynamics with application to N …
A machine learning algorithm for partitioning the nuclear vibrational space into subspaces is
introduced. The subdivision criterion is based on Liouville's theorem, ie, the best …
introduced. The subdivision criterion is based on Liouville's theorem, ie, the best …
“Divide-and-conquer” semiclassical molecular dynamics: An application to water clusters
We present an investigation of vibrational features in water clusters performed by means of
our recently established divide-and-conquer semiclassical approach [M. Ceotto, G. Di …
our recently established divide-and-conquer semiclassical approach [M. Ceotto, G. Di …
Improved semiclassical dynamics through adiabatic switching trajectory sampling
We introduce an improved semiclassical dynamics approach to quantum vibrational
spectroscopy. In this method, a harmonic-based phase space sampling is preliminarily …
spectroscopy. In this method, a harmonic-based phase space sampling is preliminarily …
Anharmonic vibrational eigenfunctions and infrared spectra from semiclassical molecular dynamics
We describe a new approach based on semiclassical molecular dynamics that allows
simulating infrared absorption or emission spectra of molecular systems with inclusion of …
simulating infrared absorption or emission spectra of molecular systems with inclusion of …