A beginner's guide to eukaryotic genome annotation
M Yandell, D Ence - Nature Reviews Genetics, 2012 - nature.com
The falling cost of genome sequencing is having a marked impact on the research
community with respect to which genomes are sequenced and how and where they are …
community with respect to which genomes are sequenced and how and where they are …
Between a chicken and a grape: estimating the number of human genes
M Pertea, SL Salzberg - Genome biology, 2010 - Springer
Between a chicken and a grape: estimating the number of human genes | Genome Biology
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …
The Sorghum bicolor genome and the diversification of grasses
Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre
and fuel. We present an initial analysis of the∼ 730-megabase Sorghum bicolor (L.) …
and fuel. We present an initial analysis of the∼ 730-megabase Sorghum bicolor (L.) …
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
EVidenceModeler (EVM) is presented as an automated eukaryotic gene structure annotation
tool that reports eukaryotic gene structures as a weighted consensus of all available …
tool that reports eukaryotic gene structures as a weighted consensus of all available …
Genome sequencing and analysis of the model grass Brachypodium distachyon
DNA sequencing and assembly Barry Kerrie 5 Lucas … - Nature, 2010 - nature.com
Three subfamilies of grasses, the Ehrhartoideae, Panicoideae and Pooideae, provide the
bulk of human nutrition and are poised to become major sources of renewable energy. Here …
bulk of human nutrition and are poised to become major sources of renewable energy. Here …
Identification of novel transcripts in annotated genomes using RNA-Seq
We describe a new 'reference annotation based transcript assembly'problem for RNA-Seq
data that involves assembling novel transcripts in the context of an existing annotation. This …
data that involves assembling novel transcripts in the context of an existing annotation. This …
TSEBRA: transcript selector for BRAKER
Background BRAKER is a suite of automatic pipelines, BRAKER1 and BRAKER2, for the
accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains …
accurate annotation of protein-coding genes in eukaryotic genomes. Each pipeline trains …
[HTML][HTML] Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel
A González-Pérez, N López-Bigas - The American Journal of Human …, 2011 - cell.com
Several large ongoing initiatives that profit from next-generation sequencing technologies
have driven—and in coming years will continue to drive—the emergence of long catalogs of …
have driven—and in coming years will continue to drive—the emergence of long catalogs of …
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics
H Sakai, SS Lee, T Tanaka, H Numa… - Plant and Cell …, 2013 - academic.oup.com
Abstract The Rice Annotation Project Database (RAP-DB, http://rapdb. dna. affrc. go. jp/) has
been providing a comprehensive set of gene annotations for the genome sequence of rice …
been providing a comprehensive set of gene annotations for the genome sequence of rice …
[HTML][HTML] A new version of the grapevine reference genome assembly (12X. v2) and of its annotation (VCost. v3)
A Canaguier, J Grimplet, G Di Gaspero… - Genomics …, 2017 - ncbi.nlm.nih.gov
The grapevine reference genome was published by Jaillon et al.[1]. The sequence for the
first version of the genome, called the 8X version, was obtained using a whole genome …
first version of the genome, called the 8X version, was obtained using a whole genome …